STRINGSTRING
ARC89579.1 ARC89579.1 ispG ispG ARC88118.1 ARC88118.1 nuoB nuoB B5V46_06185 B5V46_06185 ARC88226.1 ARC88226.1 nuoI nuoI ARC88285.1 ARC88285.1 ARC88286.1 ARC88286.1 nifH nifH ARC88341.1 ARC88341.1 ARC88342.1 ARC88342.1 ARC88389.1 ARC88389.1 ARC88460.1 ARC88460.1 ARC88479.1 ARC88479.1 ARC88498.1 ARC88498.1 ARC88559.1 ARC88559.1 edd edd moaA moaA ARC89111.1 ARC89111.1 rimO rimO lipA lipA ARC89284.1 ARC89284.1 ARC89301.1 ARC89301.1 ARC89470.1 ARC89470.1 miaB miaB ARC89578.1 ARC89578.1 ARC89635.1 ARC89635.1 nth nth ARC89674.1 ARC89674.1 ARC89694.1 ARC89694.1 ARC89706.1 ARC89706.1 ARC89708.1 ARC89708.1 ARC89832.1 ARC89832.1 ARC89838.1 ARC89838.1 ARC89859.1 ARC89859.1 thiC thiC ttcA ttcA nifH-2 nifH-2 leuC leuC ARC90272.1 ARC90272.1 ARC90297.1 ARC90297.1 bchL bchL bchB bchB bchN bchN ARC87460.1 ARC87460.1 ispH ispH queG queG ARC87219.1 ARC87219.1 ARC87206.1 ARC87206.1 ARC87608.1 ARC87608.1 ARC87615.1 ARC87615.1 rlmN rlmN B5V46_03525 B5V46_03525 ARC87806.1 ARC87806.1 ARC87928.1 ARC87928.1 ARC88034.1 ARC88034.1 ARC88039.1 ARC88039.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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ARC89579.1Protease; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)
ispG4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family. (378 aa)
ARC88118.1Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (916 aa)
nuoBNADH-quinone oxidoreductase subunit B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (174 aa)
B5V46_06185NADH-quinone oxidoreductase subunit E; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (431 aa)
ARC88226.1NADH-quinone oxidoreductase subunit G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (669 aa)
nuoINADH-quinone oxidoreductase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (164 aa)
ARC88285.1Formate dehydrogenase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (956 aa)
ARC88286.1Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (504 aa)
nifHNitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. (291 aa)
ARC88341.1Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (64 aa)
ARC88342.1Nitrogenase cofactor biosynthesis protein NifB; Derived by automated computational analysis using gene prediction method: Protein Homology. (492 aa)
ARC88389.1Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (372 aa)
ARC88460.1Indolepyruvate ferredoxin oxidoreductase; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; Derived by automated computational analysis using gene prediction method: Protein Homology. (1134 aa)
ARC88479.1Sulfite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (550 aa)
ARC88498.1Fe-S cluster assembly protein SufB; Derived by automated computational analysis using gene prediction method: Protein Homology. (510 aa)
ARC88559.1Lysine 2,3-aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (420 aa)
eddPhosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family. (601 aa)
moaAGTP 3',8-cyclase MoaA; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. (336 aa)
ARC89111.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)
rimORibosomal protein S12 methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. (462 aa)
lipAIS481 family transposase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. (316 aa)
ARC89284.1Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone. (549 aa)
ARC89301.1uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
ARC89470.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (489 aa)
miaBtRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. (449 aa)
ARC89578.1U32 family peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
ARC89635.1Glycolate oxidase iron-sulfur subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (428 aa)
nthEndonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (214 aa)
ARC89674.1L-serine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the iron-sulfur dependent L-serine dehydratase family. (458 aa)
ARC89694.1Hydrogenase formation protein HypD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HypD family. (380 aa)
ARC89706.1Uptake hydrogenase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (364 aa)
ARC89708.1HupU protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)
ARC89832.1Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (112 aa)
ARC89838.1Putative heme utilization radical SAM enzyme HutW; Derived by automated computational analysis using gene prediction method: Protein Homology. (469 aa)
ARC89859.1Glycyl-radical enzyme activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
thiCPhosphomethylpyrimidine synthase ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. (584 aa)
ttcAtRNA 2-thiocytidine(32) synthetase TtcA; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system. (289 aa)
nifH-2Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. (275 aa)
leuC3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (471 aa)
ARC90272.1Chlorophyllide a reductase iron protein subunit X; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NifH/BchL/ChlL family. (334 aa)
ARC90297.1tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB; Derived by automated computational analysis using gene prediction method: Protein Homology. (422 aa)
bchLFerredoxin:protochlorophyllide reductase (ATP-dependent) iron-sulfur ATP-binding protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP. (298 aa)
bchBFerredoxin:protochlorophyllide reductase (ATP-dependent) subunit B; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. (514 aa)
bchNFerredoxin:protochlorophyllide reductase (ATP-dependent) subunit N; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. (429 aa)
ARC87460.1A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. (353 aa)
ispH4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. (316 aa)
queGtRNA epoxyqueuosine(34) reductase QueG; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family. (349 aa)
ARC87219.1RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (403 aa)
ARC87206.1Coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. (387 aa)
ARC87608.1Oxygen-independent coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (451 aa)
ARC87615.1Cytochrome c oxidase accessory protein CcoG; Derived by automated computational analysis using gene prediction method: Protein Homology. (477 aa)
rlmN23S rRNA (adenine(2503)-C(2))-methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family. (407 aa)
B5V46_03525Hypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
ARC87806.1uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa)
ARC87928.1Succinate dehydrogenase iron-sulfur subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (259 aa)
ARC88034.1Anaerobic ribonucleoside-triphosphate reductase activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
ARC88039.1Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (545 aa)
Your Current Organism:
Rhodovulum sp. MB263
NCBI taxonomy Id: 308754
Other names: R. sp. MB263
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