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| | SRU_0014 | DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361. (814 aa) |
| | SRU_0075 | Sensor histidine kinase with multiple PAS and a response regulator receiver domain; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165; match to protein family HMM PF00512; match to protein family HMM PF02518. (802 aa) |
| | SRU_0086 | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00512; match to protein family HMM PF01336; match to protein family HMM PF02518. (712 aa) |
| | ark | Adaptive-response sensory-kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (651 aa) |
| | SRU_0095 | Utilizing regulatory protein tutC; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (1067 aa) |
| | SRU_0129 | Putative light- and oxygen-sensing transcription regulator; Identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518. (427 aa) |
| | SRU_0141 | Methyl-accepting chemotaxis protein (MCP) signaling domain; Identified by match to protein family HMM PF00015; match to protein family HMM TIGR00229. (490 aa) |
| | ark-2 | Adaptive-response sensory-kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (724 aa) |
| | SRU_0144 | Putative redox sensing protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (1668 aa) |
| | SRU_0158 | Methyl-accepting chemotaxis transducer; Identified by match to protein family HMM PF00015. (514 aa) |
| | SRU_0159 | Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015. (638 aa) |
| | SRU_0170 | Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (650 aa) |
| | SRU_0190 | ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (1203 aa) |
| | SRU_0333 | Two-component system sensor protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (1111 aa) |
| | cheB | Protein-glutamate methylesterase CheB; Identified by match to protein family HMM PF00989; match to protein family HMM PF01339; match to protein family HMM PF01739; match to protein family HMM PF02518; match to protein family HMM PF03705; match to protein family HMM TIGR00229. (1259 aa) |
| | cirA | TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782. (1015 aa) |
| | SRU_0353 | Sensory transduction histidine kinase; Identified by match to protein family HMM PF00512. (362 aa) |
| | SRU_0354 | Sensor histidine kinase; Identified by match to protein family HMM PF02518. (167 aa) |
| | SRU_0470 | Sensory histidine protein kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (2002 aa) |
| | SRU_0472 | Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (735 aa) |
| | SRU_0483 | Histidine kinase DhkJ; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07494; match to protein family HMM PF07495. (1346 aa) |
| | drrA | Response regulator DrrA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (237 aa) |
| | SRU_0575 | Phosphate regulon sensor protein phoR; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (434 aa) |
| | SRU_0655 | Sensory transduction histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (1368 aa) |
| | SRU_0678 | Sensor protein fixL; Identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229. (422 aa) |
| | SRU_0759 | Sensory transduction histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. (757 aa) |
| | SRU_0833 | Probable chemotaxis transducer, putative; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (697 aa) |
| | SRU_0834 | Two component system histidine kinase, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (1143 aa) |
| | SRU_0835 | Two-component hybrid sensor and regulator; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (912 aa) |
| | SRU_0836 | Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF02518. (696 aa) |
| | SRU_0854 | Mutant NtrC-like activator; Identified by match to protein family HMM PF00072. (133 aa) |
| | SRU_0865 | Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. (322 aa) |
| | SRU_0873 | Sensory transduction histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (668 aa) |
| | SRU_0892 | Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (484 aa) |
| | comF | Competence protein F. (239 aa) |
| | SRU_1122 | FixL-related histidine kinase; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518. (601 aa) |
| | rpoN | RNA polymerase sigma-54 factor; Identified by match to protein family HMM PF00309; match to protein family HMM PF04552; match to protein family HMM PF04963; match to protein family HMM TIGR02395. (504 aa) |
| | SRU_1164 | Conserved hypothetical protein; Identified by match to protein family HMM PF04012. (262 aa) |
| | SRU_1175 | Alkaline phosphatase synthesis transcriptional regulatory proteinphoP; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (253 aa) |
| | dprA | DNA processing protein DprA; Identified by match to protein family HMM PF00633; match to protein family HMM PF02481; match to protein family HMM TIGR00732. (388 aa) |
| | dctD | C4-dicarboxylate transport transcriptional regulatory protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199. (459 aa) |
| | SRU_1241 | Histidine kinase PhoR1; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (596 aa) |
| | SRU_1357 | Transcriptional regulator, putative; Identified by match to protein family HMM PF07228. (313 aa) |
| | SRU_1358 | ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; Identified by match to protein family HMM PF02518. (149 aa) |
| | SRU_1359 | Anti-sigma B factor antagonist, putative; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377. (113 aa) |
| | SRU_1380 | Identified by match to protein family HMM PF00903. (138 aa) |
| | pilR | Two-component system regulatory protein; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199. (507 aa) |
| | SRU_1462 | Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015. (649 aa) |
| | SRU_1535 | Response regulator; Identified by match to protein family HMM PF00072. (179 aa) |
| | SRU_1589 | Mg chelatase-like protein; Identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368. (516 aa) |
| | SRU_1632 | PspC domain family; Identified by match to protein family HMM PF04024. (223 aa) |
| | SRU_1637 | PAS domain S-box protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (904 aa) |
| | SRU_1953 | Hypothetical protein; Identified by Glimmer2; putative. (328 aa) |
| | SRU_2008 | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (1208 aa) |
| | SRU_2048 | Putative two-component system sensory/regulatory protein, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (942 aa) |
| | SRU_2062 | Sensory box sensor histidine kianse/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (905 aa) |
| | SRU_2065 | Two-component system sensor histidine kinase/response regulator, hybrid, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07495. (1076 aa) |
| | SRU_2237 | OmpA domain protein, putative; Identified by match to protein family HMM PF00691. (208 aa) |
| | SRU_2276 | PAS domain S-box protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (1155 aa) |
| | drrA-2 | Response regulator DrrA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (236 aa) |
| | SRU_2322 | DNA-binding response regulator/sensor histidine kinase, putative; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165; match to protein family HMM PF00512; match to protein family HMM PF02518. (817 aa) |
| | SRU_2393 | Sensor histidine kinase, possible pleC; Identified by match to protein family HMM PF00512; match to protein family HMM PF01336; match to protein family HMM TIGR00229. (580 aa) |
| | SRU_2394 | Sensor kinase protein rcsC; Identified by match to protein family HMM PF02518. (75 aa) |
| | SRU_2427 | Probable sensor/response hybrid, putative; Identified by match to protein family HMM PF01627. (123 aa) |
| | SRU_2487 | Two-component sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (441 aa) |
| | drrA-4 | Response regulator DrrA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (245 aa) |
| | drrA-5 | Response regulator DrrA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (226 aa) |
| | SRU_2492 | PhoP3 response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (246 aa) |
| | SRU_2509 | Two-component sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (959 aa) |
| | SRU_2510 | Sensory rhodopsin transducer (methyl-accepting chemotaxis protein); Identified by similarity to SP:P42259; match to protein family HMM PF00015; match to protein family HMM PF00672. (518 aa) |
| | SRU_2512 | Two component system histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (755 aa) |
| | SRU_2513 | Probable sensor/response regulator hybrid protein, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (624 aa) |
| | SRU_2574 | Sensor histidine kinase with a PAS domain; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (720 aa) |
| | htr1 | Sensory rhodopsin I transducer (HTR-I); Identified by similarity to SP:P33741; match to protein family HMM PF00015; match to protein family HMM PF00672. (525 aa) |
| | SRU_2581 | RNA polymerase sigma-28 factor; Identified by match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. (248 aa) |
| | SRU_2582 | Putative flagellar biosynthesis protein, putative; Identified by match to protein family HMM PF01656. (256 aa) |
| | SRU_2583 | Hypothetical protein; Identified by Glimmer2; putative. (449 aa) |
| | flhA | Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. (693 aa) |
| | SRU_2585 | Flagellar biosynthetic protein flhB; Identified by match to protein family HMM PF01312. (353 aa) |
| | fliR | Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family. (258 aa) |
| | fliQ | Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family. (89 aa) |
| | fliP | Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. (279 aa) |
| | SRU_2589 | Hypothetical protein; Identified by Glimmer2; putative. (220 aa) |
| | SRU_2590 | Possible flagellar motor switch FliN; Identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480. (250 aa) |
| | fliM | Flagellar motor switch protein FliM; Identified by match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397. (372 aa) |
| | fliL | Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. (204 aa) |
| | SRU_2593 | Probable chemotaxis protein; Identified by match to protein family HMM PF00691. (241 aa) |
| | motA | Chemotaxis motA protein; Identified by match to protein family HMM PF01618. (273 aa) |
| | SRU_2595 | Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015. (677 aa) |
| | SRU_2597 | Methyl-accepting chemotaxis transducer; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (599 aa) |
| | SRU_2598 | Hypothetical protein; Identified by Glimmer2; putative. (224 aa) |
| | SRU_2599 | Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (932 aa) |
| | SRU_2600 | Soluble lytic murein transglycosylase precursor; Identified by match to protein family HMM PF01464. (227 aa) |
| | cheB-2 | Chemotaxis response regulator protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (404 aa) |
| | cheA | Chemotaxis histidine kinase; Identified by match to protein family HMM PF01584; match to protein family HMM PF02518; match to protein family HMM PF02895. (546 aa) |
| | SRU_2603 | Hypothetical protein; Identified by Glimmer2; putative. (344 aa) |
| | cheY | Chemotaxis protein CheY; Identified by match to protein family HMM PF00072. (133 aa) |
| | cheR | Chemotaxis protein methyltransferase; Identified by match to protein family HMM PF01739; match to protein family HMM PF03705. (292 aa) |
| | cheW | Purine-binding chemotaxis protein CheW; Identified by match to protein family HMM PF01584. (190 aa) |
| | SRU_2607 | Flagellar biosynthesis cell-distal portion of basal-body rod; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429. (432 aa) |
| | SRU_2609 | Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein. (260 aa) |
| | fliJ | Flagellar export protein FliJ; Identified by match to protein family HMM TIGR02473. (184 aa) |
| | fliI | Flagellar protein export ATPase FliI; Identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR02545. (442 aa) |
| | SRU_2615 | Hypothetical protein; Identified by Glimmer2; putative. (319 aa) |
| | fliG | Flagellar motor switch protein FliG; Identified by match to protein family HMM PF01706; match to protein family HMM TIGR00207. (349 aa) |
| | fliF | Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. (532 aa) |
| | fliE | Flagellar hook-basal body complex protein (FliE); Identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205. (106 aa) |
| | flgC | Flagellar basal-body rod protein FlgC; Identified by match to protein family HMM PF06429; match to protein family HMM TIGR01395. (166 aa) |
| | SRU_2621 | Flagella basal body rod protein; Identified by match to protein family HMM PF00460. (137 aa) |
| | SRU_2622 | Sensor protein, putative; Identified by match to protein family HMM PF02518. (319 aa) |
| | ntrC | Nitrogen regulation protein NtrC; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199. (524 aa) |
| | SRU_2626 | Flagellar hook-associated protein 2 C-terminus; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. (494 aa) |
| | SRU_2627 | Flagellar protein FliS; Identified by match to protein family HMM PF02561. (146 aa) |
| | SRU_2628 | Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (1443 aa) |
| | SRU_2630 | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (414 aa) |
| | SRU_2631 | Phase 1 flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (420 aa) |
| | flgL | Flagellar hook-associated protein 3; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (319 aa) |
| | flgK | Flagellar hook-associated protein FlgK; Identified by match to protein family HMM PF06429; match to protein family HMM TIGR02492. (600 aa) |
| | flgI | Flagellar P-ring protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (366 aa) |
| | flgH | Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (215 aa) |
| | SRU_2642 | Hypothetical protein; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family. (242 aa) |
| | flgG | Flagellar basal-body rod protein FlgG; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02488. (262 aa) |
| | flgG-2 | Flagellar basal-body rod protein; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429. (241 aa) |
| | atoC | Response regulatory protein; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199. (493 aa) |
| | SRU_2697 | Identified by match to protein family HMM PF00691. (227 aa) |
| | SRU_2788 | Two-component response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196. (229 aa) |
| | SRU_2789 | DNA-binding response regulator, LuxR family; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196. (253 aa) |
| | SRU_2790 | Response regulator receiver:histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. (233 aa) |
| | SRU_2823 | Probable methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015. (614 aa) |
| | SRU_2830 | Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (247 aa) |
| | SRU_2831 | Two-component sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (501 aa) |
| | SRU_2832 | GAF domain protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF01590. (643 aa) |
