(13 nodes) Mixed, incl. Polysaccharide biosynthetic process, and MobA-like NTP transferase domain network (Salinibacter ruber)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SRU_0592	Capsule polysaccharide export system periplasmic protein; Identified by match to protein family HMM PF02563. (984 aa)
	SRU_0594	Chain length determinant protein; Identified by match to protein family HMM PF02706. (435 aa)
	SRU_0599	NDP-sugar dehydrogenase, putative; Identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (491 aa)
	SRU_0601	Perosamine synthetase, putative; Identified by match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family. (398 aa)
	SRU_0602	UDP-N-acetylglucosamine 2-epimerase; Identified by match to protein family HMM PF02350. (390 aa)
	SRU_0604	Hypothetical conserved protein; Identified by match to protein family HMM PF02585. (223 aa)
	spsE	Sialic acid synthase; Identified by match to protein family HMM PF03102. (356 aa)
	pglB	Pilin glycosylation protein PglB. (209 aa)
	SRU_0607	Putative mannose-1-phosphate guanyltransferase; Identified by match to protein family HMM PF00483; match to protein family HMM PF00571. (350 aa)
	SRU_0608	CMP-N-acetlyneuraminic acid synthetase; Identified by match to protein family HMM PF02348. (236 aa)
	SRU_0622	Putative glycosyltransferase; Identified by match to protein family HMM PF02397. (250 aa)
	mrp	Mrp protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (374 aa)
	SRU_1271	Pilin glycosylation enzyme, putative; Identified by match to protein family HMM PF04932. (506 aa)

Your Current Organism:

Salinibacter ruber

NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SRU_0592	SRU_0594	SRU_0592	SRU_0594	Capsule polysaccharide export system periplasmic protein; Identified by match to protein family HMM PF02563.	Chain length determinant protein; Identified by match to protein family HMM PF02706.	0.985
SRU_0592	SRU_0601	SRU_0592	SRU_0601	Capsule polysaccharide export system periplasmic protein; Identified by match to protein family HMM PF02563.	Perosamine synthetase, putative; Identified by match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family.	0.502
SRU_0592	SRU_0608	SRU_0592	SRU_0608	Capsule polysaccharide export system periplasmic protein; Identified by match to protein family HMM PF02563.	CMP-N-acetlyneuraminic acid synthetase; Identified by match to protein family HMM PF02348.	0.475
SRU_0592	SRU_0622	SRU_0592	SRU_0622	Capsule polysaccharide export system periplasmic protein; Identified by match to protein family HMM PF02563.	Putative glycosyltransferase; Identified by match to protein family HMM PF02397.	0.807
SRU_0592	SRU_1271	SRU_0592	SRU_1271	Capsule polysaccharide export system periplasmic protein; Identified by match to protein family HMM PF02563.	Pilin glycosylation enzyme, putative; Identified by match to protein family HMM PF04932.	0.696
SRU_0592	mrp	SRU_0592	SRU_0821	Capsule polysaccharide export system periplasmic protein; Identified by match to protein family HMM PF02563.	Mrp protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.	0.823
SRU_0592	pglB	SRU_0592	SRU_0606	Capsule polysaccharide export system periplasmic protein; Identified by match to protein family HMM PF02563.	Pilin glycosylation protein PglB.	0.451
SRU_0592	spsE	SRU_0592	SRU_0605	Capsule polysaccharide export system periplasmic protein; Identified by match to protein family HMM PF02563.	Sialic acid synthase; Identified by match to protein family HMM PF03102.	0.554
SRU_0594	SRU_0592	SRU_0594	SRU_0592	Chain length determinant protein; Identified by match to protein family HMM PF02706.	Capsule polysaccharide export system periplasmic protein; Identified by match to protein family HMM PF02563.	0.985
SRU_0594	SRU_0599	SRU_0594	SRU_0599	Chain length determinant protein; Identified by match to protein family HMM PF02706.	NDP-sugar dehydrogenase, putative; Identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.	0.425
SRU_0594	SRU_0601	SRU_0594	SRU_0601	Chain length determinant protein; Identified by match to protein family HMM PF02706.	Perosamine synthetase, putative; Identified by match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family.	0.568
SRU_0594	SRU_0608	SRU_0594	SRU_0608	Chain length determinant protein; Identified by match to protein family HMM PF02706.	CMP-N-acetlyneuraminic acid synthetase; Identified by match to protein family HMM PF02348.	0.538
SRU_0594	SRU_0622	SRU_0594	SRU_0622	Chain length determinant protein; Identified by match to protein family HMM PF02706.	Putative glycosyltransferase; Identified by match to protein family HMM PF02397.	0.688
SRU_0594	SRU_1271	SRU_0594	SRU_1271	Chain length determinant protein; Identified by match to protein family HMM PF02706.	Pilin glycosylation enzyme, putative; Identified by match to protein family HMM PF04932.	0.480
SRU_0594	pglB	SRU_0594	SRU_0606	Chain length determinant protein; Identified by match to protein family HMM PF02706.	Pilin glycosylation protein PglB.	0.560
SRU_0594	spsE	SRU_0594	SRU_0605	Chain length determinant protein; Identified by match to protein family HMM PF02706.	Sialic acid synthase; Identified by match to protein family HMM PF03102.	0.571
SRU_0599	SRU_0594	SRU_0599	SRU_0594	NDP-sugar dehydrogenase, putative; Identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.	Chain length determinant protein; Identified by match to protein family HMM PF02706.	0.425
SRU_0599	SRU_0601	SRU_0599	SRU_0601	NDP-sugar dehydrogenase, putative; Identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.	Perosamine synthetase, putative; Identified by match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family.	0.939
SRU_0599	SRU_0602	SRU_0599	SRU_0602	NDP-sugar dehydrogenase, putative; Identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.	UDP-N-acetylglucosamine 2-epimerase; Identified by match to protein family HMM PF02350.	0.992
SRU_0599	SRU_0604	SRU_0599	SRU_0604	NDP-sugar dehydrogenase, putative; Identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.	Hypothetical conserved protein; Identified by match to protein family HMM PF02585.	0.557