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| | SRU_0833 | Probable chemotaxis transducer, putative; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (697 aa) |
| | SRU_2462 | Bacterial regulatory proteins, ArsR family; Identified by match to protein family HMM PF01022. (112 aa) |
| | SRU_2449 | Conserved domain protein; Identified by match to protein family HMM PF00313. (75 aa) |
| | SRU_2427 | Probable sensor/response hybrid, putative; Identified by match to protein family HMM PF01627. (123 aa) |
| | SRU_2418 | Response regulator; Identified by match to protein family HMM PF00072. (639 aa) |
| | oxyR | Redox-sensitive transcriptional activator OxyR; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. (302 aa) |
| | SRU_2393 | Sensor histidine kinase, possible pleC; Identified by match to protein family HMM PF00512; match to protein family HMM PF01336; match to protein family HMM TIGR00229. (580 aa) |
| | SRU_2392 | Mercuric reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992. (574 aa) |
| | rodA | Rod shape-determining protein RodA; Identified by match to protein family HMM PF01098; Belongs to the SEDS family. (420 aa) |
| | hrcA | Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons. (400 aa) |
| | SRU_2346 | Serpin (serine proteinase inhibitor); Identified by match to protein family HMM PF00079; Belongs to the serpin family. (401 aa) |
| | SRU_2342 | Mur ligase family, glutamate ligase domain protein; Identified by match to protein family HMM PF02875. (543 aa) |
| | SRU_2327 | LytTr DNA-binding domain family; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397. (278 aa) |
| | SRU_2326 | Two-component signal transduction histidine kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580. (369 aa) |
| | SRU_2322 | DNA-binding response regulator/sensor histidine kinase, putative; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165; match to protein family HMM PF00512; match to protein family HMM PF02518. (817 aa) |
| | phoU | Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake. (245 aa) |
| | drrA-2 | Response regulator DrrA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (236 aa) |
| | SRU_2286 | Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440. (199 aa) |
| | SRU_2276 | PAS domain S-box protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (1155 aa) |
| | SRU_2250 | Putative transmembrane sensor; Identified by match to protein family HMM PF04773. (346 aa) |
| | SRU_2249 | RNA polymerase ECF-type sigma factor, putative; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily. (216 aa) |
| | SRU_2244 | Transcriptional regulator, AsnC family. (112 aa) |
| | SRU_2231 | YfiH; Identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; Belongs to the multicopper oxidase YfiH/RL5 family. (319 aa) |
| | SRU_2224 | Photoactive yellow protein. (156 aa) |
| | ddl | D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. (434 aa) |
| | murB | UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. (385 aa) |
| | hprK | HPr kinase/phosphorylase; Catalyzes the ATP- as well as the pyrophosphate-dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK/P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P-Ser-HPr). (303 aa) |
| | SRU_2166 | Transcription regulator, Crp family, putative; Identified by match to protein family HMM PF00027. (230 aa) |
| | SRU_2138 | Putative RNA polymerase sigma factor; Identified by match to protein family HMM PF04542; Belongs to the sigma-70 factor family. ECF subfamily. (184 aa) |
| | SRU_2137 | Sigma factor regulatory protein, FecR/PupR family; Identified by match to protein family HMM PF04773. (400 aa) |
| | recX | Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family. (222 aa) |
| | SRU_2102 | Molybdopterin oxidoreductase membrane subunit, putative. (379 aa) |
| | yfiA | Ribosomal subunit interface protein; Identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741. (132 aa) |
| | cspa | Conserved domain protein; Identified by match to protein family HMM PF00313. (110 aa) |
| | SRU_2065 | Two-component system sensor histidine kinase/response regulator, hybrid, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07495. (1076 aa) |
| | SRU_2062 | Sensory box sensor histidine kianse/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (905 aa) |
| | SRU_2056 | Nitrogen regulatory protein P-II; Identified by match to protein family HMM PF00543. (118 aa) |
| | SRU_2048 | Putative two-component system sensory/regulatory protein, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (942 aa) |
| | SRU_2045 | Iron dependent repressor, putative; Identified by match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023. (217 aa) |
| | SRU_2008 | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (1208 aa) |
| | SRU_1977 | Hypothetical transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (212 aa) |
| | rpoD | RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (313 aa) |
| | dacA | Conserved hypothetical protein TIGR00159; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. (266 aa) |
| | SRU_1939 | Conserved hypothetical protein. (429 aa) |
| | SRU_1934 | RNA polymerase sigma-H factor, putative; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily. (191 aa) |
| | SRU_1867 | Putative transcription regulator protein; Identified by match to protein family HMM PF00376. (134 aa) |
| | murA | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. (475 aa) |
| | SRU_1850 | Tetratricopeptide repeat domain protein. (627 aa) |
| | vicK | Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. (412 aa) |
| | SRU_1823 | Conserved hypothetical protein; Belongs to the GbsR family. (198 aa) |
| | prfB | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. (378 aa) |
| | nusA | N utilization substance protein A; Participates in both transcription termination and antitermination. (546 aa) |
| | infB | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. (1029 aa) |
| | pnp | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (722 aa) |
| | tuf-2 | Translation elongation factor Tu; Identified by match to protein family HMM PF00009; match to protein family HMM PF03143; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00485. (396 aa) |
| | nusG | Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination. (185 aa) |
| | rplA | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (237 aa) |
| | SRU_1727 | Conserved domain protein; Identified by match to protein family HMM PF00313. (71 aa) |
| | SRU_1707 | Putative ECF-subfamily sigma factor; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily. (184 aa) |
| | prfC | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. (533 aa) |
| | hslU | Heat shock protein HslVU, ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. (481 aa) |
| | SRU_1641 | Cell shape-determining protein MreC, putative; Identified by match to protein family HMM PF04085. (250 aa) |
| | SRU_1640 | Regulator of ftsI, penicillin binding protein 3, septation function; Identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904. (335 aa) |
| | SRU_1637 | PAS domain S-box protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (904 aa) |
| | lpdA | Dihydrolipoamide dehydrogenase; Identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350. (489 aa) |
| | SRU_1578 | PIN domain protein, putative; Identified by match to protein family HMM PF01850. (140 aa) |
| | SRU_1568 | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. (179 aa) |
| | SRU_1563 | Putative cold shock-like protein cspG; Identified by match to protein family HMM PF00313. (163 aa) |
| | SRU_1546 | Hypothetical protein; Identified by Glimmer2; putative. (313 aa) |
| | SRU_1535 | Response regulator; Identified by match to protein family HMM PF00072. (179 aa) |
| | SRU_1521 | Conserved hypothetical protein. (391 aa) |
| | SRU_1519 | Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392. (326 aa) |
| | SRU_1512 | HTH-type transcriptional regulator celR; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532. (346 aa) |
| | SRU_1504 | Conserved hypothetical protein. (404 aa) |
| | SRU_1500 | Xanthorhodopsin; Identified by match to protein family HMM PF01036. (273 aa) |
| | SRU_1482 | Conserved hypothetical protein. (171 aa) |
| | SRU_1472 | Transcriptional regulator, putative; Identified by match to protein family HMM PF00165. (261 aa) |
| | SRU_1462 | Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015. (649 aa) |
| | SRU_1450 | Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199. (559 aa) |
| | greA | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. (164 aa) |
| | pilR | Two-component system regulatory protein; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199. (507 aa) |
| | SRU_1377 | DNA-binding protein HU; Identified by match to protein family HMM PF00216; Belongs to the bacterial histone-like protein family. (100 aa) |
| | dnaA-2 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (564 aa) |
| | prfA | Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. (357 aa) |
| | SRU_1359 | Anti-sigma B factor antagonist, putative; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377. (113 aa) |
| | SRU_1358 | ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; Identified by match to protein family HMM PF02518. (149 aa) |
| | SRU_1316 | Domain of unknown function, putative; Identified by match to protein family HMM PF01902. (230 aa) |
| | SRU_1283 | Transcriptional regulator, putative; Identified by match to protein family HMM PF01047. (137 aa) |
| | SRU_1261 | Domain of unknown function (DUF490) family; Identified by match to protein family HMM PF04357. (1689 aa) |
| | SRU_1256 | Conserved hypothetical protein. (358 aa) |
| | SRU_1241 | Histidine kinase PhoR1; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (596 aa) |
| | rrp | Response regulatory protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199. (523 aa) |
| | SRU_1208 | Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440. (207 aa) |
| | SRU_1207 | Conserved hypothetical protein. (359 aa) |
| | dctD | C4-dicarboxylate transport transcriptional regulatory protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199. (459 aa) |
| | SRU_1193 | Transcriptional regulator, BlaI/MecI/CopY family; Identified by match to protein family HMM PF03965. (137 aa) |
| | SRU_1184 | Identified by match to protein family HMM PF01205. (203 aa) |
| | lexA | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response). (216 aa) |
| | SRU_1175 | Alkaline phosphatase synthesis transcriptional regulatory proteinphoP; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (253 aa) |
| | fus | Elongation factor G; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF01926; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231. (707 aa) |
| | rpoN | RNA polymerase sigma-54 factor; Identified by match to protein family HMM PF00309; match to protein family HMM PF04552; match to protein family HMM PF04963; match to protein family HMM TIGR02395. (504 aa) |
| | SRU_1135 | D-ala D-ala ligase C-terminus superfamily; Identified by match to protein family HMM PF07478. (294 aa) |
| | SRU_1122 | FixL-related histidine kinase; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518. (601 aa) |
| | SRU_1079 | Hypothetical protein; Identified by Glimmer2; putative. (155 aa) |
| | hup | Probable DNA-binding protein HU; Identified by match to protein family HMM PF00216; Belongs to the bacterial histone-like protein family. (126 aa) |
| | infA | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. (73 aa) |
| | tuf | Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (396 aa) |
| | fusA | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] (706 aa) |
| | SRU_1015 | Predicted transcription regulator, ArsR family. (118 aa) |
| | SRU_0966 | Cold-shock' DNA-binding domain, putative; Identified by match to protein family HMM PF00313. (69 aa) |
| | efp | Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. (192 aa) |
| | SRU_0930 | Hypothetical protein; Identified by Glimmer2; putative. (196 aa) |
| | SRU_0928 | TetR family transcriptional regulator, putative; Identified by match to protein family HMM PF00440. (233 aa) |
| | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; Identified by match to protein family HMM PF01225; match to protein family HMM PF02875. (491 aa) |
| | SRU_0893 | Hypothetical protein; Identified by Glimmer2; putative. (921 aa) |
| | SRU_0892 | Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (484 aa) |
| | SRU_0875 | Putative DeoR-family transcriptional regulator. (319 aa) |
| | SRU_0873 | Sensory transduction histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (668 aa) |
| | SRU_0865 | Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. (322 aa) |
| | SRU_0854 | Mutant NtrC-like activator; Identified by match to protein family HMM PF00072. (133 aa) |
| | SRU_0836 | Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF02518. (696 aa) |
| | SRU_0835 | Two-component hybrid sensor and regulator; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (912 aa) |
| | SRU_0834 | Two component system histidine kinase, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (1143 aa) |
| | SRU_0795 | Hypothetical protein; Identified by Glimmer2; putative. (411 aa) |
| | SRU_0793 | Hypothetical protein; Identified by Glimmer2; putative. (286 aa) |
| | SRU_0759 | Sensory transduction histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. (757 aa) |
| | SRU_0750 | Histidine kinase family; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580. (379 aa) |
| | SRU_0749 | Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397. (248 aa) |
| | SRU_0748 | Rrf2 family protein (putative transcriptional regulator); Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738. (215 aa) |
| | SRU_0730 | Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system. (64 aa) |
| | SRU_0693 | Hypothetical protein; Identified by Glimmer2; putative. (368 aa) |
| | SRU_0678 | Sensor protein fixL; Identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229. (422 aa) |
| | SRU_0677 | Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196. (217 aa) |
| | SRU_0655 | Sensory transduction histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (1368 aa) |
| | mutS2 | MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (819 aa) |
| | SRU_0639 | Prevent-host-death family protein, putative; Antitoxin component of a type II toxin-antitoxin (TA) system. (81 aa) |
| | SRU_0630 | Putative transcriptional regulator. (229 aa) |
| | SRU_0621 | Probable glycosyltransferase; Identified by match to protein family HMM PF00953. (608 aa) |
| | SRU_0575 | Phosphate regulon sensor protein phoR; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (434 aa) |
| | drrA | Response regulator DrrA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (237 aa) |
| | murC | UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family. (475 aa) |
| | murG | Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. (370 aa) |
| | SRU_0559 | Cell division protein FtsW, putative; Identified by match to protein family HMM PF01098; Belongs to the SEDS family. (379 aa) |
| | murD | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. (460 aa) |
| | mraY | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. (385 aa) |
| | murE | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. (522 aa) |
| | mraZ | mraZ protein; Identified by match to protein family HMM PF02381; match to protein family HMM TIGR00242; Belongs to the MraZ family. (158 aa) |
| | SRU_0551 | LexA repressor, putative; Identified by match to protein family HMM PF01726; match to protein family HMM TIGR00498. (338 aa) |
| | SRU_0547 | Appr-1-p processing enzyme family protein; Identified by match to protein family HMM PF01661. (178 aa) |
| | SRU_0546 | Proline dehydrogenase superfamily; Identified by match to protein family HMM PF01619. (286 aa) |
| | SRU_0529 | biotin--acetyl-CoA-carboxylase ligase; Identified by similarity to SP:P42975; match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121. (265 aa) |
| | SRU_0499 | Hypothetical protein; Identified by Glimmer2; putative. (238 aa) |
| | mviN | Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. (565 aa) |
| | SRU_0483 | Histidine kinase DhkJ; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07494; match to protein family HMM PF07495. (1346 aa) |
| | SRU_0477 | Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440. (304 aa) |
| | SRU_0472 | Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (735 aa) |
| | SRU_0470 | Sensory histidine protein kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (2002 aa) |
| | SRU_0457 | Putative RNA polymerase-binding protein DksA. (158 aa) |
| | SRU_0448 | Hypothetical protein; Identified by Glimmer2; putative. (232 aa) |
| | SRU_0442 | Phosphate transport system protein PhoU; Identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135. (308 aa) |
| | algR | Two-component system, regulatory protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397. (246 aa) |
| | SRU_0415 | Putative transmembrane sensor histidine kinase transcription regulator protein; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580. (377 aa) |
| | lepA | GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. (604 aa) |
| | SRU_0384 | Putative AsnC-family transcriptional regulator; Identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199. (165 aa) |
| | rbsR | Ribose operon repressor; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532. (337 aa) |
| | SRU_0357 | Transcriptional regulator, LacI family; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532. (379 aa) |
| | SRU_0350 | Hypothetical protein; Identified by Glimmer2; putative; Belongs to the GbsR family. (174 aa) |
| | uppP | Undecaprenyl-diphosphatase 1; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. (270 aa) |
| | cheB | Protein-glutamate methylesterase CheB; Identified by match to protein family HMM PF00989; match to protein family HMM PF01339; match to protein family HMM PF01739; match to protein family HMM PF02518; match to protein family HMM PF03705; match to protein family HMM TIGR00229. (1259 aa) |
| | SRU_0333 | Two-component system sensor protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (1111 aa) |
| | SRU_0319 | Conserved hypothetical protein. (198 aa) |
| | SRU_0316 | Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF07702. (269 aa) |
| | umuD | umuD protein; Identified by similarity to SP:P04153; match to protein family HMM PF00717; Belongs to the peptidase S24 family. (140 aa) |
| | SRU_0298 | Transcriptional regulator, BlaI/MecI/CopY family; Identified by match to protein family HMM PF03965. (144 aa) |
| | SRU_0266 | Putative glycosyl transferase N-acetylglucosaminyltransferase), RgpG; Identified by match to protein family HMM PF00953. (420 aa) |
| | SRU_0259 | Histidine kinase family; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580. (325 aa) |
| | SRU_0258 | Alginate biosynthesis regulatory protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397. (252 aa) |
| | tsf | Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. (276 aa) |
| | mfd | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1142 aa) |
| | SRU_0075 | Sensor histidine kinase with multiple PAS and a response regulator receiver domain; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165; match to protein family HMM PF00512; match to protein family HMM PF02518. (802 aa) |
| | SRU_0252 | TcrA; Identified by match to protein family HMM PF00072. (156 aa) |
| | SRU_0077 | Mercuric reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992. (525 aa) |
| | SRU_0082 | HTH-type transcriptional repressor Bm3R1, putative; Identified by match to protein family HMM PF00440. (215 aa) |
| | SRU_0086 | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00512; match to protein family HMM PF01336; match to protein family HMM PF02518. (712 aa) |
| | ark | Adaptive-response sensory-kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (651 aa) |
| | SRU_0089 | Membrane bound his kinase A; Identified by match to protein family HMM PF02518. (569 aa) |
| | SRU_0095 | Utilizing regulatory protein tutC; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (1067 aa) |
| | SRU_0112 | Transcriptional regulator, ArsR family protein; Identified by match to protein family HMM PF01022. (148 aa) |
| | SRU_0129 | Putative light- and oxygen-sensing transcription regulator; Identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518. (427 aa) |
| | SRU_0130 | GumN protein; Identified by match to protein family HMM PF07446. (312 aa) |
| | SRU_0138 | Transcriptional regulatory protein, putative; Identified by match to protein family HMM PF01022. (221 aa) |
| | SRU_0140 | Hypothetical protein; Identified by Glimmer2; putative. (347 aa) |
| | SRU_0141 | Methyl-accepting chemotaxis protein (MCP) signaling domain; Identified by match to protein family HMM PF00015; match to protein family HMM TIGR00229. (490 aa) |
| | ark-2 | Adaptive-response sensory-kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (724 aa) |
| | SRU_0144 | Putative redox sensing protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (1668 aa) |
| | SRU_0152 | Hypothetical protein; Identified by Glimmer2; putative. (542 aa) |
| | SRU_0158 | Methyl-accepting chemotaxis transducer; Identified by match to protein family HMM PF00015. (514 aa) |
| | SRU_0159 | Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015. (638 aa) |
| | SRU_0170 | Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (650 aa) |
| | SRU_0175 | Putative anti-sigma factor; Identified by match to protein family HMM PF04773. (373 aa) |
| | SRU_0176 | Possible sigma-70 factor, ECF subfamily, putative; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily. (194 aa) |
| | SRU_0190 | ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (1203 aa) |
| | vapC | PIN domain, putative; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (135 aa) |
| | SRU_0207 | PIN domain, putative; Identified by match to protein family HMM PF01850. (147 aa) |
| | SRU_0210 | PIN domain, putative; Identified by match to protein family HMM PF01850. (130 aa) |
| | SRU_0234 | Transcriptional regulator, AbrB family protein; Identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439. (98 aa) |
| | SRU_0244 | Conserved hypothetical protein. (216 aa) |
| | SRU_0251 | Sensory box/ggdef family protein, putative; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254. (1118 aa) |
| | dnaA | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (524 aa) |
| | SRU_0004 | RNA polymerase sigma-70 factor, putative; Identified by similarity to GB:AAM71887.1; Belongs to the sigma-70 factor family. ECF subfamily. (211 aa) |
| | SRU_0008 | Uncharacterized BCR, COG1937 family; Identified by match to protein family HMM PF02583. (113 aa) |
| | nusB | Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. (160 aa) |
| | SRU_2863 | Conserved hypothetical protein. (345 aa) |
| | SRU_2856 | Probable transmembrane sensor histidine kinase transcription regulator protein; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580. (423 aa) |
| | SRU_2855 | Two-component system response regulator protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397. (322 aa) |
| | rbsR-2 | Ribose operon repressor; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532. (331 aa) |
| | SRU_2832 | GAF domain protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF01590. (643 aa) |
| | SRU_2831 | Two-component sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (501 aa) |
| | SRU_2830 | Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (247 aa) |
| | SRU_2827 | Nitrogen regulatory protein P-II; Identified by match to protein family HMM PF00543; Belongs to the P(II) protein family. (112 aa) |
| | SRU_2823 | Probable methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015. (614 aa) |
| | SRU_2815 | Putative addiction module antidote; Identified by match to protein family HMM TIGR02609. (76 aa) |
| | infC | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. (153 aa) |
| | SRU_2790 | Response regulator receiver:histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. (233 aa) |
| | SRU_2789 | DNA-binding response regulator, LuxR family; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196. (253 aa) |
| | SRU_2788 | Two-component response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196. (229 aa) |
| | SRU_2786 | Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440. (229 aa) |
| | SRU_2780 | Halorhodopsin (HR); Identified by similarity to SP:P33742; match to protein family HMM PF01036. (249 aa) |
| | SRU_2773 | Probable transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (210 aa) |
| | SRU_2762 | Extracytoplasmic function alternative sigma factor; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily. (192 aa) |
| | sigW | RNA polymerase ECF-type sigma factor; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily. (190 aa) |
| | SRU_2746 | Hypothetical protein; Identified by Glimmer2; putative. (280 aa) |
| | SRU_2726 | LytTr DNA-binding domain family; Identified by match to protein family HMM PF00072. (250 aa) |
| | SRU_2725 | Two-component system sensor protein, putative; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580. (379 aa) |
| | SRU_2723 | Conserved hypothetical protein. (176 aa) |
| | SRU_2702 | Ferric uptake regulation protein; Identified by match to protein family HMM PF01475; Belongs to the Fur family. (180 aa) |
| | SRU_2684 | PhaF, putative. (141 aa) |
| | SRU_2683 | Putative regulator for granule-associated proteins; Identified by match to protein family HMM PF07879. (172 aa) |
| | SRU_2678 | HD domain protein; Identified by match to protein family HMM PF01966. (222 aa) |
| | SRU_2667 | Conserved hypothetical protein TIGR01033; Identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033. (279 aa) |
| | atoC | Response regulatory protein; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199. (493 aa) |
| | SRU_2635 | Hdig domain protein, putative. (334 aa) |
| | SRU_2628 | Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (1443 aa) |
| | ntrC | Nitrogen regulation protein NtrC; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199. (524 aa) |
| | SRU_2622 | Sensor protein, putative; Identified by match to protein family HMM PF02518. (319 aa) |
| | cheW | Purine-binding chemotaxis protein CheW; Identified by match to protein family HMM PF01584. (190 aa) |
| | cheY | Chemotaxis protein CheY; Identified by match to protein family HMM PF00072. (133 aa) |
| | SRU_2603 | Hypothetical protein; Identified by Glimmer2; putative. (344 aa) |
| | cheA | Chemotaxis histidine kinase; Identified by match to protein family HMM PF01584; match to protein family HMM PF02518; match to protein family HMM PF02895. (546 aa) |
| | cheB-2 | Chemotaxis response regulator protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (404 aa) |
| | SRU_2599 | Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (932 aa) |
| | SRU_2597 | Methyl-accepting chemotaxis transducer; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (599 aa) |
| | SRU_2595 | Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015. (677 aa) |
| | SRU_2582 | Putative flagellar biosynthesis protein, putative; Identified by match to protein family HMM PF01656. (256 aa) |
| | SRU_2581 | RNA polymerase sigma-28 factor; Identified by match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. (248 aa) |
| | htr1 | Sensory rhodopsin I transducer (HTR-I); Identified by similarity to SP:P33741; match to protein family HMM PF00015; match to protein family HMM PF00672. (525 aa) |
| | SRU_2579 | Sensory rhodopsin (SRI); Identified by similarity to SP:P33743; match to protein family HMM PF01036. (235 aa) |
| | SRU_2578 | HD domain protein, putative. (316 aa) |
| | SRU_2574 | Sensor histidine kinase with a PAS domain; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (720 aa) |
| | SRU_2563 | Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. (300 aa) |
| | SRU_2562 | Conserved hypothetical protein TIGR00427; Identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427. (198 aa) |
| | rsfS | Domain of unknown function DUF143 family; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. (155 aa) |
| | SRU_2537 | Transcriptional regulator, ArsR family, putative; Identified by match to protein family HMM PF01022. (103 aa) |
| | rfaY | RNA polymerase ECF-type sigma factor; Identified by match to protein family HMM PF04542; Belongs to the sigma-70 factor family. ECF subfamily. (181 aa) |
| | SRU_2514 | HD domain protein, putative. (267 aa) |
| | SRU_2513 | Probable sensor/response regulator hybrid protein, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (624 aa) |
| | SRU_2512 | Two component system histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (755 aa) |
| | SRU_2511 | Sensory rhodopsin (SRI); Identified by similarity to SP:P33743; match to protein family HMM PF01036. (239 aa) |
| | SRU_2510 | Sensory rhodopsin transducer (methyl-accepting chemotaxis protein); Identified by similarity to SP:P42259; match to protein family HMM PF00015; match to protein family HMM PF00672. (518 aa) |
| | SRU_2509 | Two-component sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (959 aa) |
| | SRU_2505 | Conserved hypothetical protein. (176 aa) |
| | rpoE | RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM PF04542; Belongs to the sigma-70 factor family. ECF subfamily. (205 aa) |
| | SRU_2492 | PhoP3 response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (246 aa) |
| | drrA-5 | Response regulator DrrA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (226 aa) |
| | drrA-4 | Response regulator DrrA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (245 aa) |
| | SRU_2487 | Two-component sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (441 aa) |
