STRINGSTRING
SRU_2036 SRU_2036 SRU_2851 SRU_2851 clpB clpB SRU_2832 SRU_2832 SRU_2831 SRU_2831 SRU_2830 SRU_2830 SRU_2823 SRU_2823 SRU_2822 SRU_2822 SRU_2819 SRU_2819 ccmG ccmG nfi nfi SRU_2790 SRU_2790 SRU_2780 SRU_2780 SRU_2776 SRU_2776 SRU_2775 SRU_2775 pcaC pcaC SRU_2769 SRU_2769 SRU_2762 SRU_2762 sigW sigW SRU_2742 SRU_2742 SRU_2726 SRU_2726 SRU_2725 SRU_2725 SRU_2710 SRU_2710 SRU_2697 SRU_2697 ruvC ruvC trxB trxB SRU_2635 SRU_2635 SRU_2628 SRU_2628 SRU_2622 SRU_2622 fliG fliG fliJ fliJ cheW cheW cheY cheY SRU_2603 SRU_2603 cheA cheA cheB-2 cheB-2 SRU_2599 SRU_2599 SRU_2597 SRU_2597 SRU_2595 SRU_2595 SRU_2593 SRU_2593 fliL fliL fliM fliM SRU_2590 SRU_2590 htr1 htr1 SRU_2579 SRU_2579 SRU_2578 SRU_2578 SRU_2574 SRU_2574 SRU_2556 SRU_2556 recR recR SRU_2553 SRU_2553 rfaY rfaY SRU_2514 SRU_2514 SRU_2513 SRU_2513 SRU_2512 SRU_2512 SRU_2511 SRU_2511 SRU_2510 SRU_2510 SRU_2509 SRU_2509 radA radA rpoE rpoE SRU_2492 SRU_2492 drrA-5 drrA-5 drrA-4 drrA-4 SRU_2487 SRU_2487 SRU_2453 SRU_2453 SRU_2438 SRU_2438 SRU_2427 SRU_2427 SRU_2421 SRU_2421 SRU_2418 SRU_2418 SRU_2414 SRU_2414 katG katG SRU_2393 SRU_2393 uvrA-2 uvrA-2 SRU_2376 SRU_2376 nth nth dnaJ-2 dnaJ-2 SRU_2330 SRU_2330 SRU_2327 SRU_2327 SRU_2326 SRU_2326 SRU_2322 SRU_2322 drrA-2 drrA-2 SRU_2280 SRU_2280 SRU_2276 SRU_2276 SRU_2249 SRU_2249 SRU_2248 SRU_2248 SRU_2247 SRU_2247 SRU_2237 SRU_2237 recJ recJ SRU_2231 SRU_2231 SRU_2224 SRU_2224 SRU_2222 SRU_2222 SRU_2209 SRU_2209 SRU_2183 SRU_2183 SRU_2179 SRU_2179 SRU_2176 SRU_2176 hprK hprK SRU_2138 SRU_2138 mutY mutY SRU_2112 SRU_2112 msrB-2 msrB-2 SRU_2071 SRU_2071 SRU_2065 SRU_2065 SRU_2062 SRU_2062 SRU_2059 SRU_2059 SRU_2052 SRU_2052 SRU_2048 SRU_2048 SRU_2038 SRU_2038 ybjZ ybjZ SRU_2008 SRU_2008 SRU_2005 SRU_2005 dacA dacA SRU_1934 SRU_1934 SRU_1903 SRU_1903 SRU_1884 SRU_1884 SRU_1830 SRU_1830 vicK vicK msrB msrB SRU_1810 SRU_1810 SRU_1807 SRU_1807 SRU_1801 SRU_1801 phrB-3 phrB-3 SRU_1724 SRU_1724 mutL mutL SRU_1707 SRU_1707 SRU_1682 SRU_1682 SRU_1637 SRU_1637 polA polA mutS mutS SRU_1605 SRU_1605 uvrC uvrC msrA-2 msrA-2 SRU_1570 SRU_1570 SRU_1545 SRU_1545 dinB dinB SRU_1535 SRU_1535 SRU_1534 SRU_1534 SRU_1533 SRU_1533 recA recA SRU_1530 SRU_1530 SRU_1523 SRU_1523 SRU_1515 SRU_1515 SRU_1500 SRU_1500 SRU_1462 SRU_1462 SRU_1394 SRU_1394 SRU_1307 SRU_1307 osmC osmC SRU_1243 SRU_1243 SRU_1241 SRU_1241 SRU_1219 SRU_1219 phrB-2 phrB-2 lexA lexA recO recO SRU_1175 SRU_1175 uvrB uvrB ruvB ruvB SRU_1144 SRU_1144 SRU_1122 SRU_1122 SRU_1102 SRU_1102 SRU_1101 SRU_1101 SRU_1099 SRU_1099 SRU_1086 SRU_1086 phrB phrB msrA msrA SRU_1012 SRU_1012 SRU_0988 SRU_0988 SRU_0892 SRU_0892 ligA ligA SRU_0878 SRU_0878 SRU_0873 SRU_0873 SRU_0865 SRU_0865 SRU_0854 SRU_0854 SRU_0836 SRU_0836 SRU_0835 SRU_0835 SRU_0834 SRU_0834 SRU_0833 SRU_0833 recN recN SRU_0784 SRU_0784 SRU_0768 SRU_0768 SRU_0759 SRU_0759 SRU_0750 SRU_0750 SRU_0749 SRU_0749 SRU_0701 SRU_0701 SRU_0686 SRU_0686 SRU_0678 SRU_0678 SRU_0675 SRU_0675 SRU_0667 SRU_0667 SRU_0655 SRU_0655 mutS2 mutS2 SRU_0582 SRU_0582 SRU_0575 SRU_0575 drrA drrA SRU_0551 SRU_0551 SRU_0526 SRU_0526 SRU_0483 SRU_0483 SRU_0472 SRU_0472 dnaJ dnaJ mutM mutM ruvA ruvA uvrA uvrA SRU_0448 SRU_0448 SRU_0426 SRU_0426 SRU_0425 SRU_0425 ApaG ApaG algR algR SRU_0415 SRU_0415 SRU_0411 SRU_0411 uppP uppP cheB cheB SRU_0333 SRU_0333 SRU_0319 SRU_0319 SRU_0305 SRU_0305 umuD umuD recQ recQ recG recG SRU_0261 SRU_0261 SRU_0259 SRU_0259 SRU_0258 SRU_0258 SRU_0252 SRU_0252 SRU_0251 SRU_0251 SRU_0190 SRU_0190 SRU_0176 SRU_0176 SRU_0170 SRU_0170 SRU_0159 SRU_0159 SRU_0158 SRU_0158 SRU_0152 SRU_0152 SRU_0144 SRU_0144 ark-2 ark-2 SRU_0141 SRU_0141 SRU_0140 SRU_0140 SRU_0137 SRU_0137 SRU_0129 SRU_0129 SRU_0095 SRU_0095 SRU_0091 SRU_0091 SRU_0089 SRU_0089 SRU_0088 SRU_0088 ark ark SRU_0086 SRU_0086 SRU_0075 SRU_0075 recF recF mfd mfd SRU_0047 SRU_0047 SRU_0027 SRU_0027 ychF ychF SRU_0014 SRU_0014 SRU_0004 SRU_0004 SRU_2863 SRU_2863 SRU_2861 SRU_2861 SRU_2856 SRU_2856 SRU_2855 SRU_2855
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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SRU_2036Fasciclin domain protein; Identified by match to protein family HMM PF02469. (195 aa)
SRU_2851ABC transporter permease protein; Identified by match to protein family HMM PF02687. (406 aa)
clpBATP-dependent chaperone protein ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. (896 aa)
SRU_2832GAF domain protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF01590. (643 aa)
SRU_2831Two-component sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (501 aa)
SRU_2830Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (247 aa)
SRU_2823Probable methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015. (614 aa)
SRU_2822Hypothetical protein; Identified by Glimmer2; putative. (203 aa)
SRU_2819Thioredoxin, putative. (242 aa)
ccmGCytochrome c biogenesis protein, thiol:disulfide interchange protein. (197 aa)
nfiEndonuclease V; DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA. (222 aa)
SRU_2790Response regulator receiver:histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. (233 aa)
SRU_2780Halorhodopsin (HR); Identified by similarity to SP:P33742; match to protein family HMM PF01036. (249 aa)
SRU_2776Peptide methionine sulfoxide reductase; Identified by match to protein family HMM PF01625; match to protein family HMM TIGR00401. (258 aa)
SRU_2775Putative methionine sulfoxide reductase; Identified by match to protein family HMM PF01625. (307 aa)
pcaC4-carboxymuconolactone decarboxylase domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (174 aa)
SRU_2769Uncharacterized peroxidase-related enzyme subfamily; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (186 aa)
SRU_2762Extracytoplasmic function alternative sigma factor; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily. (192 aa)
sigWRNA polymerase ECF-type sigma factor; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily. (190 aa)
SRU_2742Phospholipase/carboxylesterase; Identified by match to protein family HMM PF02230. (218 aa)
SRU_2726LytTr DNA-binding domain family; Identified by match to protein family HMM PF00072. (250 aa)
SRU_2725Two-component system sensor protein, putative; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580. (379 aa)
SRU_2710Conserved hypothetical protein. (216 aa)
SRU_2697Identified by match to protein family HMM PF00691. (227 aa)
ruvCCrossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (179 aa)
trxBThioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292. (372 aa)
SRU_2635Hdig domain protein, putative. (334 aa)
SRU_2628Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (1443 aa)
SRU_2622Sensor protein, putative; Identified by match to protein family HMM PF02518. (319 aa)
fliGFlagellar motor switch protein FliG; Identified by match to protein family HMM PF01706; match to protein family HMM TIGR00207. (349 aa)
fliJFlagellar export protein FliJ; Identified by match to protein family HMM TIGR02473. (184 aa)
cheWPurine-binding chemotaxis protein CheW; Identified by match to protein family HMM PF01584. (190 aa)
cheYChemotaxis protein CheY; Identified by match to protein family HMM PF00072. (133 aa)
SRU_2603Hypothetical protein; Identified by Glimmer2; putative. (344 aa)
cheAChemotaxis histidine kinase; Identified by match to protein family HMM PF01584; match to protein family HMM PF02518; match to protein family HMM PF02895. (546 aa)
cheB-2Chemotaxis response regulator protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (404 aa)
SRU_2599Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (932 aa)
SRU_2597Methyl-accepting chemotaxis transducer; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (599 aa)
SRU_2595Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015. (677 aa)
SRU_2593Probable chemotaxis protein; Identified by match to protein family HMM PF00691. (241 aa)
fliLFlagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. (204 aa)
fliMFlagellar motor switch protein FliM; Identified by match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397. (372 aa)
SRU_2590Possible flagellar motor switch FliN; Identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480. (250 aa)
htr1Sensory rhodopsin I transducer (HTR-I); Identified by similarity to SP:P33741; match to protein family HMM PF00015; match to protein family HMM PF00672. (525 aa)
SRU_2579Sensory rhodopsin (SRI); Identified by similarity to SP:P33743; match to protein family HMM PF01036. (235 aa)
SRU_2578HD domain protein, putative. (316 aa)
SRU_2574Sensor histidine kinase with a PAS domain; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (720 aa)
SRU_2556Conserved hypothetical protein TIGR00103, putative; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (178 aa)
recRRecombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (237 aa)
SRU_2553Hypothetical protein; Identified by Glimmer2; putative. (2597 aa)
rfaYRNA polymerase ECF-type sigma factor; Identified by match to protein family HMM PF04542; Belongs to the sigma-70 factor family. ECF subfamily. (181 aa)
SRU_2514HD domain protein, putative. (267 aa)
SRU_2513Probable sensor/response regulator hybrid protein, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (624 aa)
SRU_2512Two component system histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (755 aa)
SRU_2511Sensory rhodopsin (SRI); Identified by similarity to SP:P33743; match to protein family HMM PF01036. (239 aa)
SRU_2510Sensory rhodopsin transducer (methyl-accepting chemotaxis protein); Identified by similarity to SP:P42259; match to protein family HMM PF00015; match to protein family HMM PF00672. (518 aa)
SRU_2509Two-component sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (959 aa)
radADNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (459 aa)
rpoERNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM PF04542; Belongs to the sigma-70 factor family. ECF subfamily. (205 aa)
SRU_2492PhoP3 response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (246 aa)
drrA-5Response regulator DrrA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (226 aa)
drrA-4Response regulator DrrA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (245 aa)
SRU_2487Two-component sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (441 aa)
SRU_2453Putative membrane protein; Identified by match to protein family HMM PF07681. (168 aa)
SRU_2438Hypothetical protein; Identified by Glimmer2; putative. (317 aa)
SRU_2427Probable sensor/response hybrid, putative; Identified by match to protein family HMM PF01627. (123 aa)
SRU_2421Arsenite-activated ATPase (arsA) subfamily; Identified by match to protein family HMM PF02374; match to protein family HMM TIGR00345. (423 aa)
SRU_2418Response regulator; Identified by match to protein family HMM PF00072. (639 aa)
SRU_2414beta-Ig-H3/Fasciclin domain; Identified by match to protein family HMM PF02469. (306 aa)
katGCatalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. (729 aa)
SRU_2393Sensor histidine kinase, possible pleC; Identified by match to protein family HMM PF00512; match to protein family HMM PF01336; match to protein family HMM TIGR00229. (580 aa)
uvrA-2Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (1016 aa)
SRU_2376Conserved hypothetical protein. (176 aa)
nthEndonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (324 aa)
dnaJ-2Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] (388 aa)
SRU_2330Deoxyribodipyrimidine photolyase, putative; Identified by match to protein family HMM PF00875; match to protein family HMM PF03441; Belongs to the DNA photolyase family. (537 aa)
SRU_2327LytTr DNA-binding domain family; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397. (278 aa)
SRU_2326Two-component signal transduction histidine kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580. (369 aa)
SRU_2322DNA-binding response regulator/sensor histidine kinase, putative; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165; match to protein family HMM PF00512; match to protein family HMM PF02518. (817 aa)
drrA-2Response regulator DrrA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (236 aa)
SRU_2280Predicted redox protein. (140 aa)
SRU_2276PAS domain S-box protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (1155 aa)
SRU_2249RNA polymerase ECF-type sigma factor, putative; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily. (216 aa)
SRU_2248Osteoblast specific factor 2-related protein; Identified by match to protein family HMM PF02469. (467 aa)
SRU_2247Hypothetical protein; Identified by Glimmer2; putative. (334 aa)
SRU_2237OmpA domain protein, putative; Identified by match to protein family HMM PF00691. (208 aa)
recJsingle-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644. (584 aa)
SRU_2231YfiH; Identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; Belongs to the multicopper oxidase YfiH/RL5 family. (319 aa)
SRU_2224Photoactive yellow protein. (156 aa)
SRU_2222Integral membrane protein TerC family; Identified by match to protein family HMM PF03741. (265 aa)
SRU_2209Osteoblast specific factor 2-related protein; Identified by match to protein family HMM PF02469. (179 aa)
SRU_2183Putative 6-O-methylguanine DNA methyltransferase family protein; Identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589. (128 aa)
SRU_21796-O-methylguanine DNA methyltransferase, DNA binding domain subfamily; Identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589. (110 aa)
SRU_2176Fasciclin domain protein; Identified by match to protein family HMM PF02469. (407 aa)
hprKHPr kinase/phosphorylase; Catalyzes the ATP- as well as the pyrophosphate-dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK/P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P-Ser-HPr). (303 aa)
SRU_2138Putative RNA polymerase sigma factor; Identified by match to protein family HMM PF04542; Belongs to the sigma-70 factor family. ECF subfamily. (184 aa)
mutYA/G-specific adenine glycosylase; Identified by match to protein family HMM PF00293; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084. (354 aa)
SRU_2112Conserved hypothetical protein TIGR00486; Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486. (429 aa)
msrB-2methionine-R-sulfoxide reductase; Identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357. (185 aa)
SRU_2071Conserved hypothetical protein. (199 aa)
SRU_2065Two-component system sensor histidine kinase/response regulator, hybrid, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07495. (1076 aa)
SRU_2062Sensory box sensor histidine kianse/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (905 aa)
SRU_2059DnaJ domain protein; Identified by match to protein family HMM PF00226. (256 aa)
SRU_2052Conserved hypothetical protein. (427 aa)
SRU_2048Putative two-component system sensory/regulatory protein, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (942 aa)
SRU_2038Deoxyribodipyrimidine photolyase-related protein; Identified by match to protein family HMM PF04244. (514 aa)
ybjZABC transporter, ATP-binding protein; Identified by match to protein family HMM PF02687. (414 aa)
SRU_2008Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (1208 aa)
SRU_2005Putative esterase superfamily; Identified by match to protein family HMM PF00756. (370 aa)
dacAConserved hypothetical protein TIGR00159; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. (266 aa)
SRU_1934RNA polymerase sigma-H factor, putative; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily. (191 aa)
SRU_1903Hypothetical protein; Identified by Glimmer2; putative. (472 aa)
SRU_1884Conserved hypothetical protein; Identified by match to protein family HMM TIGR00374. (371 aa)
SRU_1830Protein of unknown function (DUF541) superfamily; Identified by match to protein family HMM PF04402. (247 aa)
vicKSensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. (412 aa)
msrBmethionine-R-sulfoxide reductase; Identified by similarity to SP:P39903; match to protein family HMM PF01641; match to protein family HMM TIGR00357; Belongs to the MsrB Met sulfoxide reductase family. (134 aa)
SRU_1810Antibiotic biosynthesis monooxygenase domain protein; Identified by match to protein family HMM PF03992. (113 aa)
SRU_1807Hypothetical protein; Identified by Glimmer2; putative. (1073 aa)
SRU_1801Ferredoxin nadp+ reductase; Identified by match to protein family HMM PF00175. (278 aa)
phrB-3Deoxyribodipyrimidine photolyase; Identified by similarity to SP:P12769; match to protein family HMM PF00875; match to protein family HMM PF03441. (462 aa)
SRU_1724Mn-superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (205 aa)
mutLDNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (647 aa)
SRU_1707Putative ECF-subfamily sigma factor; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily. (184 aa)
SRU_1682PHP domain protein; Identified by match to protein family HMM PF02811. (576 aa)
SRU_1637PAS domain S-box protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (904 aa)
polADNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (926 aa)
mutSDNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (908 aa)
SRU_1605DnaJ-like subfamily B member 2; Identified by match to protein family HMM PF00226. (183 aa)
uvrCExcinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (633 aa)
msrA-2methionine-S-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (230 aa)
SRU_1570Conserved hypothetical protein; Identified by match to protein family HMM TIGR00374. (396 aa)
SRU_1545DNA-3-methyladenine glycosylase; Identified by similarity to SP:Q39147; match to protein family HMM PF02245; match to protein family HMM TIGR00567; Belongs to the DNA glycosylase MPG family. (206 aa)
dinBPutative DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (373 aa)
SRU_1535Response regulator; Identified by match to protein family HMM PF00072. (179 aa)
SRU_1534Hypothetical protein; Identified by Glimmer2; putative. (726 aa)
SRU_1533Hypothetical protein; Identified by Glimmer2; putative. (263 aa)
recArecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (353 aa)
SRU_1530PAP2 superfamily protein; Identified by match to protein family HMM PF01569. (251 aa)
SRU_1523Identified by match to protein family HMM PF02566. (408 aa)
SRU_1515Antioxidant, AhpC/TSA family; Identified by match to protein family HMM PF00578. (166 aa)
SRU_1500Xanthorhodopsin; Identified by match to protein family HMM PF01036. (273 aa)
SRU_1462Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015. (649 aa)
SRU_1394Conserved hypothetical protein. (391 aa)
SRU_1307Integral membrane protein; Identified by match to protein family HMM PF04307. (362 aa)
osmCIdentified by match to protein family HMM PF02566. (155 aa)
SRU_1243Uncharacterized conserved protein. (97 aa)
SRU_1241Histidine kinase PhoR1; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (596 aa)
SRU_1219Identified by match to protein family HMM PF02566. (147 aa)
phrB-2Deoxyribodipyrimidine photolyase; Identified by similarity to SP:P05327; match to protein family HMM PF00875; match to protein family HMM PF03441; Belongs to the DNA photolyase family. (483 aa)
lexALexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response). (216 aa)
recODNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (260 aa)
SRU_1175Alkaline phosphatase synthesis transcriptional regulatory proteinphoP; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (253 aa)
uvrBExcinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (691 aa)
ruvBHolliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (344 aa)
SRU_1144Hypothetical protein; Identified by Glimmer2; putative. (158 aa)
SRU_1122FixL-related histidine kinase; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518. (601 aa)
SRU_1102HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1049 aa)
SRU_1101Conserved hypothetical protein. (342 aa)
SRU_1099Type I restriction-modification system, S subunit, putative; Identified by match to protein family HMM PF01420. (408 aa)
SRU_1086Hypothetical protein; Identified by Glimmer2; putative. (469 aa)
phrBDeoxyribodipyrimidine photolyase; Identified by similarity to SP:P05327; match to protein family HMM PF00875; match to protein family HMM PF03441; Belongs to the DNA photolyase family. (463 aa)
msrAmethionine-S-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (218 aa)
SRU_1012Conserved hypothetical protein. (172 aa)
SRU_0988Identified by match to protein family HMM PF00004. (456 aa)
SRU_0892Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (484 aa)
ligADNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. (690 aa)
SRU_0878Hypothetical protein; Identified by Glimmer2; putative. (228 aa)
SRU_0873Sensory transduction histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (668 aa)
SRU_0865Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. (322 aa)
SRU_0854Mutant NtrC-like activator; Identified by match to protein family HMM PF00072. (133 aa)
SRU_0836Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF02518. (696 aa)
SRU_0835Two-component hybrid sensor and regulator; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (912 aa)
SRU_0834Two component system histidine kinase, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (1143 aa)
SRU_0833Probable chemotaxis transducer, putative; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (697 aa)
recNDNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (572 aa)
SRU_0784Conserved hypothetical protein. (999 aa)
SRU_0768Esterase/lipase, putative. (218 aa)
SRU_0759Sensory transduction histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. (757 aa)
SRU_0750Histidine kinase family; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580. (379 aa)
SRU_0749Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397. (248 aa)
SRU_0701Putative phenol hydroxylase; Identified by match to protein family HMM PF00175; match to protein family HMM PF00970. (220 aa)
SRU_0686Transglycosylase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912. (791 aa)
SRU_0678Sensor protein fixL; Identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229. (422 aa)
SRU_0675Hypothetical protein; Identified by Glimmer2; putative. (254 aa)
SRU_0667Pyridine nucleotide-disulphide oxidoreductase, putative; Identified by match to protein family HMM PF01266; match to protein family HMM PF07992. (327 aa)
SRU_0655Sensory transduction histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (1368 aa)
mutS2MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (819 aa)
SRU_0582Nucleotidyltransferase, putative. (162 aa)
SRU_0575Phosphate regulon sensor protein phoR; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (434 aa)
drrAResponse regulator DrrA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (237 aa)
SRU_0551LexA repressor, putative; Identified by match to protein family HMM PF01726; match to protein family HMM TIGR00498. (338 aa)
SRU_0526Protein of unknown function (DUF328) superfamily; Belongs to the UPF0246 family. (274 aa)
SRU_0483Histidine kinase DhkJ; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07494; match to protein family HMM PF07495. (1346 aa)
SRU_0472Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (735 aa)
dnaJdnaJ protein; Identified by match to protein family HMM PF00226; match to protein family HMM PF01556. (332 aa)
mutMformamidopyrimidine-DNA glycosylase; Identified by similarity to SP:O34403; match to protein family HMM PF01149; match to protein family HMM PF06831. (265 aa)
ruvAHolliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (202 aa)
uvrAExcinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (981 aa)
SRU_0448Hypothetical protein; Identified by Glimmer2; putative. (232 aa)
SRU_0426DoxX subfamily, putative; Identified by match to protein family HMM PF07681. (166 aa)
SRU_0425Identified by match to protein family HMM PF07681. (136 aa)
ApaGApag protein; Identified by match to protein family HMM PF04379. (169 aa)
algRTwo-component system, regulatory protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397. (246 aa)
SRU_0415Putative transmembrane sensor histidine kinase transcription regulator protein; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580. (377 aa)
SRU_0411DoxX subfamily, putative; Identified by match to protein family HMM PF07681. (290 aa)
uppPUndecaprenyl-diphosphatase 1; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. (270 aa)
cheBProtein-glutamate methylesterase CheB; Identified by match to protein family HMM PF00989; match to protein family HMM PF01339; match to protein family HMM PF01739; match to protein family HMM PF02518; match to protein family HMM PF03705; match to protein family HMM TIGR00229. (1259 aa)
SRU_0333Two-component system sensor protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (1111 aa)
SRU_0319Conserved hypothetical protein. (198 aa)
SRU_0305Protein umuC; Identified by match to protein family HMM PF00817. (426 aa)
umuDumuD protein; Identified by similarity to SP:P04153; match to protein family HMM PF00717; Belongs to the peptidase S24 family. (140 aa)
recQATP-dependent DNA helicase RecQ; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389. (607 aa)
recGATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (700 aa)
SRU_0261Osteoblast specific factor 2-related protein; Identified by match to protein family HMM PF02469. (187 aa)
SRU_0259Histidine kinase family; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580. (325 aa)
SRU_0258Alginate biosynthesis regulatory protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397. (252 aa)
SRU_0252TcrA; Identified by match to protein family HMM PF00072. (156 aa)
SRU_0251Sensory box/ggdef family protein, putative; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254. (1118 aa)
SRU_0190ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (1203 aa)
SRU_0176Possible sigma-70 factor, ECF subfamily, putative; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily. (194 aa)
SRU_0170Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (650 aa)
SRU_0159Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015. (638 aa)
SRU_0158Methyl-accepting chemotaxis transducer; Identified by match to protein family HMM PF00015. (514 aa)
SRU_0152Hypothetical protein; Identified by Glimmer2; putative. (542 aa)
SRU_0144Putative redox sensing protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (1668 aa)
ark-2Adaptive-response sensory-kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (724 aa)
SRU_0141Methyl-accepting chemotaxis protein (MCP) signaling domain; Identified by match to protein family HMM PF00015; match to protein family HMM TIGR00229. (490 aa)
SRU_0140Hypothetical protein; Identified by Glimmer2; putative. (347 aa)
SRU_0137Putative phenol hydroxylase; Identified by match to protein family HMM PF00175; match to protein family HMM PF00970. (220 aa)
SRU_0129Putative light- and oxygen-sensing transcription regulator; Identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518. (427 aa)
SRU_0095Utilizing regulatory protein tutC; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (1067 aa)
SRU_0091Conserved hypothetical protein. (355 aa)
SRU_0089Membrane bound his kinase A; Identified by match to protein family HMM PF02518. (569 aa)
SRU_0088Pyridine nucleotide-disulphide oxidoreductase domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992. (846 aa)
arkAdaptive-response sensory-kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (651 aa)
SRU_0086Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00512; match to protein family HMM PF01336; match to protein family HMM PF02518. (712 aa)
SRU_0075Sensor histidine kinase with multiple PAS and a response regulator receiver domain; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165; match to protein family HMM PF00512; match to protein family HMM PF02518. (802 aa)
recFDNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. (412 aa)
mfdTranscription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1142 aa)
SRU_0047DoxX subfamily, putative; Identified by match to protein family HMM PF07681. (376 aa)
SRU_0027uracil-DNA glycosylase, family 4; Identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758. (287 aa)
ychFGTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (400 aa)
SRU_0014DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361. (814 aa)
SRU_0004RNA polymerase sigma-70 factor, putative; Identified by similarity to GB:AAM71887.1; Belongs to the sigma-70 factor family. ECF subfamily. (211 aa)
SRU_2863Conserved hypothetical protein. (345 aa)
SRU_2861Identified by match to protein family HMM PF03372. (270 aa)
SRU_2856Probable transmembrane sensor histidine kinase transcription regulator protein; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580. (423 aa)
SRU_2855Two-component system response regulator protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397. (322 aa)
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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