(4 nodes) Cys/Met metabolism, pyridoxal phosphate-dependent enzyme network (Salinibacter ruber)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SRU_2363	Cys/Met metabolism PLP-dependent enzyme superfamily; Identified by match to protein family HMM PF01053. (412 aa)
	SRU_1368	Cystathionine beta-lyase MetC; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212. (382 aa)
	SRU_1161	Cystathionine beta-lyase MetC; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212. (408 aa)
	cysD	O-acetylhomoserine sulfhydrylase; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM TIGR01326. (470 aa)

Your Current Organism:

Salinibacter ruber

NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SRU_1161	SRU_1368	SRU_1161	SRU_1368	Cystathionine beta-lyase MetC; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212.	Cystathionine beta-lyase MetC; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212.	0.915
SRU_1161	SRU_2363	SRU_1161	SRU_2363	Cystathionine beta-lyase MetC; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212.	Cys/Met metabolism PLP-dependent enzyme superfamily; Identified by match to protein family HMM PF01053.	0.906
SRU_1161	cysD	SRU_1161	SRU_0479	Cystathionine beta-lyase MetC; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212.	O-acetylhomoserine sulfhydrylase; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM TIGR01326.	0.933
SRU_1368	SRU_1161	SRU_1368	SRU_1161	Cystathionine beta-lyase MetC; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212.	Cystathionine beta-lyase MetC; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212.	0.915
SRU_1368	SRU_2363	SRU_1368	SRU_2363	Cystathionine beta-lyase MetC; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212.	Cys/Met metabolism PLP-dependent enzyme superfamily; Identified by match to protein family HMM PF01053.	0.914
SRU_1368	cysD	SRU_1368	SRU_0479	Cystathionine beta-lyase MetC; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212.	O-acetylhomoserine sulfhydrylase; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM TIGR01326.	0.934
SRU_2363	SRU_1161	SRU_2363	SRU_1161	Cys/Met metabolism PLP-dependent enzyme superfamily; Identified by match to protein family HMM PF01053.	Cystathionine beta-lyase MetC; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212.	0.906
SRU_2363	SRU_1368	SRU_2363	SRU_1368	Cys/Met metabolism PLP-dependent enzyme superfamily; Identified by match to protein family HMM PF01053.	Cystathionine beta-lyase MetC; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212.	0.914
SRU_2363	cysD	SRU_2363	SRU_0479	Cys/Met metabolism PLP-dependent enzyme superfamily; Identified by match to protein family HMM PF01053.	O-acetylhomoserine sulfhydrylase; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM TIGR01326.	0.931
cysD	SRU_1161	SRU_0479	SRU_1161	O-acetylhomoserine sulfhydrylase; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM TIGR01326.	Cystathionine beta-lyase MetC; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212.	0.933
cysD	SRU_1368	SRU_0479	SRU_1368	O-acetylhomoserine sulfhydrylase; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM TIGR01326.	Cystathionine beta-lyase MetC; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212.	0.934
cysD	SRU_2363	SRU_0479	SRU_2363	O-acetylhomoserine sulfhydrylase; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM TIGR01326.	Cys/Met metabolism PLP-dependent enzyme superfamily; Identified by match to protein family HMM PF01053.	0.931