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SRU_1161 SRU_1161 SRU_1149 SRU_1149 SRU_0938 SRU_0938 SRU_0837 SRU_0837 SRU_0799 SRU_0799 SRU_0601 SRU_0601 bioF bioF SRU_2363 SRU_2363 SRU_2217 SRU_2217 cysD cysD kbl kbl glyA glyA serC serC hisC hisC SRU_1858 SRU_1858 aspB aspB hemL hemL tnaA tnaA ybjU ybjU SRU_1417 SRU_1417 sufS sufS SRU_1368 SRU_1368 SRU_1324 SRU_1324 SRU_1268 SRU_1268 SRU_1258 SRU_1258 gcvP gcvP SRU_1231 SRU_1231 SRU_1188 SRU_1188
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SRU_1161Cystathionine beta-lyase MetC; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212. (408 aa)
SRU_1149Aminotransferase, class V superfamily; Identified by match to protein family HMM PF00266. (504 aa)
SRU_0938Aspartate aminotransferase; Identified by match to protein family HMM PF00155; match to protein family HMM PF01212. (404 aa)
SRU_0837Tyrosine decarboxylase, putative; Identified by match to protein family HMM PF00282. (842 aa)
SRU_0799Aminotransferase, class III superfamily; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (462 aa)
SRU_0601Perosamine synthetase, putative; Identified by match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family. (398 aa)
bioF8-amino-7-oxononanoate synthase; Identified by match to protein family HMM PF00155; match to protein family HMM PF00202. (437 aa)
SRU_2363Cys/Met metabolism PLP-dependent enzyme superfamily; Identified by match to protein family HMM PF01053. (412 aa)
SRU_2217Aminotransferase, class III superfamily; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (395 aa)
cysDO-acetylhomoserine sulfhydrylase; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM TIGR01326. (470 aa)
kbl2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA. (397 aa)
glyASerine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (432 aa)
serCPhosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (369 aa)
hisCHistidinol-phosphate aminotransferase; Identified by match to protein family HMM PF00155; match to protein family HMM TIGR01141; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (354 aa)
SRU_1858Cysteine desulfurase; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212. (428 aa)
aspBAspartate aminotransferase; Identified by match to protein family HMM PF00155. (410 aa)
hemLGlutamate-1-semialdehyde-2,1-aminomutase; Identified by match to protein family HMM PF00202; match to protein family HMM TIGR00713. (446 aa)
tnaABeta-eliminating lyase; Identified by match to protein family HMM PF01212; Belongs to the beta-eliminating lyase family. (471 aa)
ybjUL-allo-threonine aldolase; Identified by match to protein family HMM PF00155; match to protein family HMM PF01212. (348 aa)
SRU_1417Conserved hypothetical protein. (413 aa)
sufSCysteine desulfurases, SufS subfamily; Identified by match to protein family HMM PF00266; match to protein family HMM TIGR01979; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (418 aa)
SRU_1368Cystathionine beta-lyase MetC; Identified by match to protein family HMM PF01053; match to protein family HMM PF01212. (382 aa)
SRU_1324Aspartate aminotransferase; Identified by match to protein family HMM PF00155. (397 aa)
SRU_1268Probable class-V aminotransferase; Identified by match to protein family HMM PF00266. (442 aa)
SRU_1258L-2,4-diaminobutyrate decarboxylase; Identified by match to protein family HMM PF00282; match to protein family HMM PF01212. (518 aa)
gcvPGlycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. (980 aa)
SRU_1231Pyridoxal-dependent decarboxylase family protein, putative; Identified by match to protein family HMM PF00282; match to protein family HMM PF01212. (470 aa)
SRU_1188Aminotransferase, class V superfamily; Identified by match to protein family HMM PF00266. (458 aa)
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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