(16 nodes) ClpP/crotonase-like domain superfamily network (Salinibacter ruber)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

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Your Input:
	menB	Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily. (297 aa)
	accD	acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA. (282 aa)
	SRU_1210	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737. (802 aa)
	SRU_1218	propionyl-CoA carboxylase, beta subunit, putative; Identified by match to protein family HMM PF01039. (698 aa)
	clpP	Clp protease; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. (246 aa)
	yfcX	Fatty oxidation complex, alpha subunit; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family. (719 aa)
	SRU_1476	Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family. (284 aa)
	ctp	Carboxyl-terminal protease; Identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; Belongs to the peptidase S41A family. (536 aa)
	SRU_2235	MdsD protein, putative; Degrades oligopeptides; Belongs to the peptidase S41B family. (1092 aa)
	pccB	Putative propionyl-CoA carboxylase beta chain protein; Identified by match to protein family HMM PF01039. (561 aa)
	accA	acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (335 aa)
	clpP2	ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. (272 aa)
	sppA	Signal peptide peptidase SppA, 67K type; Identified by match to protein family HMM PF01343; match to protein family HMM TIGR00705; match to protein family HMM TIGR00706. (746 aa)
	prc	Carboxy-terminal peptidase; Identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; Belongs to the peptidase S41A family. (551 aa)
	SRU_0296	Peptidase, S41 family; Identified by match to protein family HMM PF03572. (639 aa)
	SRU_0297	Peptidase, S41 family; Identified by match to protein family HMM PF03572; match to protein family HMM PF05569. (1161 aa)

Your Current Organism:

Salinibacter ruber

NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SRU_0296	SRU_0297	SRU_0296	SRU_0297	Peptidase, S41 family; Identified by match to protein family HMM PF03572.	Peptidase, S41 family; Identified by match to protein family HMM PF03572; match to protein family HMM PF05569.	0.747
SRU_0297	SRU_0296	SRU_0297	SRU_0296	Peptidase, S41 family; Identified by match to protein family HMM PF03572; match to protein family HMM PF05569.	Peptidase, S41 family; Identified by match to protein family HMM PF03572.	0.747
SRU_1210	SRU_1218	SRU_1210	SRU_1218	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	propionyl-CoA carboxylase, beta subunit, putative; Identified by match to protein family HMM PF01039.	0.749
SRU_1210	SRU_1476	SRU_1210	SRU_1476	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	0.663
SRU_1210	pccB	SRU_1210	SRU_2246	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	Putative propionyl-CoA carboxylase beta chain protein; Identified by match to protein family HMM PF01039.	0.749
SRU_1210	yfcX	SRU_1210	SRU_1459	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	Fatty oxidation complex, alpha subunit; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family.	0.973
SRU_1218	SRU_1210	SRU_1218	SRU_1210	propionyl-CoA carboxylase, beta subunit, putative; Identified by match to protein family HMM PF01039.	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	0.749
SRU_1218	SRU_1476	SRU_1218	SRU_1476	propionyl-CoA carboxylase, beta subunit, putative; Identified by match to protein family HMM PF01039.	Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	0.621
SRU_1218	yfcX	SRU_1218	SRU_1459	propionyl-CoA carboxylase, beta subunit, putative; Identified by match to protein family HMM PF01039.	Fatty oxidation complex, alpha subunit; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family.	0.749
SRU_1476	SRU_1210	SRU_1476	SRU_1210	Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	0.663
SRU_1476	SRU_1218	SRU_1476	SRU_1218	Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	propionyl-CoA carboxylase, beta subunit, putative; Identified by match to protein family HMM PF01039.	0.621
SRU_1476	pccB	SRU_1476	SRU_2246	Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	Putative propionyl-CoA carboxylase beta chain protein; Identified by match to protein family HMM PF01039.	0.485
SRU_1476	yfcX	SRU_1476	SRU_1459	Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	Fatty oxidation complex, alpha subunit; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family.	0.769
accA	accD	SRU_2348	SRU_1155	acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.	acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA.	0.999
accD	accA	SRU_1155	SRU_2348	acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA.	acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.	0.999
pccB	SRU_1210	SRU_2246	SRU_1210	Putative propionyl-CoA carboxylase beta chain protein; Identified by match to protein family HMM PF01039.	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	0.749
pccB	SRU_1476	SRU_2246	SRU_1476	Putative propionyl-CoA carboxylase beta chain protein; Identified by match to protein family HMM PF01039.	Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	0.485
pccB	yfcX	SRU_2246	SRU_1459	Putative propionyl-CoA carboxylase beta chain protein; Identified by match to protein family HMM PF01039.	Fatty oxidation complex, alpha subunit; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family.	0.947
yfcX	SRU_1210	SRU_1459	SRU_1210	Fatty oxidation complex, alpha subunit; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family.	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	0.973
yfcX	SRU_1218	SRU_1459	SRU_1218	Fatty oxidation complex, alpha subunit; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family.	propionyl-CoA carboxylase, beta subunit, putative; Identified by match to protein family HMM PF01039.	0.749