STRINGSTRING
SRU_1313 SRU_1313 SRU_1181 SRU_1181 SRU_1178 SRU_1178 SRU_1098 SRU_1098 SRU_1020 SRU_1020 SRU_0996 SRU_0996 sun sun SRU_0832 SRU_0832 ubiE ubiE prmA prmA SRU_0780 SRU_0780 SRU_0621 SRU_0621 SRU_0613 SRU_0613 mraW mraW SRU_0548 SRU_0548 cheB cheB SRU_0064 SRU_0064 rsmG rsmG SRU_2314 SRU_2314 SRU_2332 SRU_2332 SRU_2416 SRU_2416 ArsM ArsM cheR cheR SRU_2734 SRU_2734 SRU_2820 SRU_2820 SRU_2227 SRU_2227 ksgA ksgA SRU_2078 SRU_2078 hemK hemK SRU_2002 SRU_2002 SRU_1983 SRU_1983 pcm pcm SRU_1904 SRU_1904 SRU_1881 SRU_1881 SRU_1592 SRU_1592 SRU_1525 SRU_1525 SRU_1507 SRU_1507 SRU_1292 SRU_1292
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SRU_1313Predicted SAM-dependent methyltransferase, putative. (212 aa)
SRU_1181Conserved hypothetical protein. (223 aa)
SRU_1178Methyltransferase, putative. (217 aa)
SRU_1098Putative type i restriction enzyme hindviip m protein; Identified by match to protein family HMM PF02384. (522 aa)
SRU_1020Putative RNA methylase family UPF0020. (156 aa)
SRU_0996Conserved hypothetical protein. (297 aa)
sunRibosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. (427 aa)
SRU_0832Conserved hypothetical protein. (217 aa)
ubiEUbiquinone/menaquinone biosynthesis methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). (244 aa)
prmARibosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. (280 aa)
SRU_0780Conserved hypothetical protein. (203 aa)
SRU_0621Probable glycosyltransferase; Identified by match to protein family HMM PF00953. (608 aa)
SRU_0613Methyltransferase domain protein. (210 aa)
mraWS-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (336 aa)
SRU_0548Hypothetical protein; Identified by Glimmer2; putative. (285 aa)
cheBProtein-glutamate methylesterase CheB; Identified by match to protein family HMM PF00989; match to protein family HMM PF01339; match to protein family HMM PF01739; match to protein family HMM PF02518; match to protein family HMM PF03705; match to protein family HMM TIGR00229. (1259 aa)
SRU_0064Biotin synthesis protein, putative. (118 aa)
rsmGGlucose inhibited division protein B; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. (215 aa)
SRU_2314Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) family; Identified by match to protein family HMM PF01135. (315 aa)
SRU_2332Probable phosphatidylethanolamine N-methyltransferase. (223 aa)
SRU_2416Identified by match to protein family HMM PF01596. (220 aa)
ArsMCyclopropane-fatty-acyl-phospholipid synthase; Identified by match to protein family HMM PF01135; match to protein family HMM PF01209; match to protein family HMM PF02353. (270 aa)
cheRChemotaxis protein methyltransferase; Identified by match to protein family HMM PF01739; match to protein family HMM PF03705. (292 aa)
SRU_2734Conserved hypothetical protein. (162 aa)
SRU_2820THUMP domain/methyltransferase domain protein; Identified by match to protein family HMM PF01170; match to protein family HMM PF02926; Belongs to the methyltransferase superfamily. (369 aa)
SRU_2227Conserved hypothetical protein. (258 aa)
ksgADimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. (296 aa)
SRU_2078Conserved hypothetical protein TIGR00095; Identified by match to protein family HMM PF01170; match to protein family HMM PF03602. (204 aa)
hemKhemK protein; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily. (303 aa)
SRU_2002Conserved hypothetical protein. (328 aa)
SRU_1983Predicted SAM-dependent methyltransferase. (209 aa)
pcmprotein-L-isoaspartate(D-aspartate) O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. (230 aa)
SRU_1904Conserved hypothetical protein. (219 aa)
SRU_1881Methyltransferase, putative. (247 aa)
SRU_1592Menaquinone biosynthesis methyltransferase ubiE; Identified by match to protein family HMM PF01209. (253 aa)
SRU_1525Putative rRNA methylase superfamily; Identified by match to protein family HMM PF06962. (192 aa)
SRU_1507Conserved hypothetical protein. (304 aa)
SRU_1292Conserved hypothetical protein. (221 aa)
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.