(16 nodes) Butanoate metabolism network (Salinibacter ruber)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SRU_0069	Putative phosphate acetyltransferase/enoyl-CoA hydratase fusion protein; Identified by match to protein family HMM PF01575. (148 aa)
	SRU_0423	Pyruvate synthase; Identified by match to protein family HMM PF01558; match to protein family HMM PF01855. (632 aa)
	SRU_0424	2-oxoacid:ferredoxin oxidoreductase, beta subunit; Identified by match to protein family HMM PF02775. (454 aa)
	sdhB	Succinate dehydrogenase, iron-sulfur protein; Identified by match to protein family HMM PF00037; match to protein family HMM TIGR00384. (243 aa)
	sdhA	Succinate dehydrogenase, flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM PF07992; match to protein family HMM TIGR01812; match to protein family HMM TIGR01816. (611 aa)
	SRU_0486	Succinate dehydrogenase, membrane subunit, putative. (150 aa)
	SRU_0487	Putative succinate dehydrogenase membrane subunit; Identified by match to protein family HMM PF01127. (164 aa)
	SRU_1210	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737. (802 aa)
	SRU_1246	3-hydroxy-3-methylglutaryl-CoA lyase; Identified by match to protein family HMM PF00682. (307 aa)
	SRU_1344	Aldehyde dehydrogenase-like protein yneI; Identified by match to protein family HMM PF00171. (495 aa)
	SRU_1413	3-hydroxybutyryl-CoA dehydrogenase; Identified by match to protein family HMM PF00725; match to protein family HMM PF02737. (284 aa)
	yfcX	Fatty oxidation complex, alpha subunit; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family. (719 aa)
	SRU_1547	acetyl-CoA acetyltransferase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family. (396 aa)
	ilvB	Acetolactate synthase, large subunit, biosynthetic type; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118. (596 aa)
	SRU_2146	Acetolactate synthase small subunit; Identified by match to protein family HMM PF01842; match to protein family HMM TIGR00119. (240 aa)
	SRU_2444	FAD binding domain protein; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM PF07992. (581 aa)

Your Current Organism:

Salinibacter ruber

NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SRU_0069	SRU_1210	SRU_0069	SRU_1210	Putative phosphate acetyltransferase/enoyl-CoA hydratase fusion protein; Identified by match to protein family HMM PF01575.	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	0.787
SRU_0069	SRU_1547	SRU_0069	SRU_1547	Putative phosphate acetyltransferase/enoyl-CoA hydratase fusion protein; Identified by match to protein family HMM PF01575.	acetyl-CoA acetyltransferase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.612
SRU_0069	ilvB	SRU_0069	SRU_2145	Putative phosphate acetyltransferase/enoyl-CoA hydratase fusion protein; Identified by match to protein family HMM PF01575.	Acetolactate synthase, large subunit, biosynthetic type; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118.	0.451
SRU_0069	yfcX	SRU_0069	SRU_1459	Putative phosphate acetyltransferase/enoyl-CoA hydratase fusion protein; Identified by match to protein family HMM PF01575.	Fatty oxidation complex, alpha subunit; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family.	0.977
SRU_0423	SRU_0424	SRU_0423	SRU_0424	Pyruvate synthase; Identified by match to protein family HMM PF01558; match to protein family HMM PF01855.	2-oxoacid:ferredoxin oxidoreductase, beta subunit; Identified by match to protein family HMM PF02775.	0.999
SRU_0423	SRU_0487	SRU_0423	SRU_0487	Pyruvate synthase; Identified by match to protein family HMM PF01558; match to protein family HMM PF01855.	Putative succinate dehydrogenase membrane subunit; Identified by match to protein family HMM PF01127.	0.746
SRU_0423	SRU_1210	SRU_0423	SRU_1210	Pyruvate synthase; Identified by match to protein family HMM PF01558; match to protein family HMM PF01855.	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	0.427
SRU_0423	SRU_1246	SRU_0423	SRU_1246	Pyruvate synthase; Identified by match to protein family HMM PF01558; match to protein family HMM PF01855.	3-hydroxy-3-methylglutaryl-CoA lyase; Identified by match to protein family HMM PF00682.	0.939
SRU_0423	SRU_1344	SRU_0423	SRU_1344	Pyruvate synthase; Identified by match to protein family HMM PF01558; match to protein family HMM PF01855.	Aldehyde dehydrogenase-like protein yneI; Identified by match to protein family HMM PF00171.	0.881
SRU_0423	SRU_1547	SRU_0423	SRU_1547	Pyruvate synthase; Identified by match to protein family HMM PF01558; match to protein family HMM PF01855.	acetyl-CoA acetyltransferase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.935
SRU_0423	SRU_2146	SRU_0423	SRU_2146	Pyruvate synthase; Identified by match to protein family HMM PF01558; match to protein family HMM PF01855.	Acetolactate synthase small subunit; Identified by match to protein family HMM PF01842; match to protein family HMM TIGR00119.	0.929
SRU_0423	SRU_2444	SRU_0423	SRU_2444	Pyruvate synthase; Identified by match to protein family HMM PF01558; match to protein family HMM PF01855.	FAD binding domain protein; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM PF07992.	0.778
SRU_0423	ilvB	SRU_0423	SRU_2145	Pyruvate synthase; Identified by match to protein family HMM PF01558; match to protein family HMM PF01855.	Acetolactate synthase, large subunit, biosynthetic type; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118.	0.946
SRU_0423	sdhA	SRU_0423	SRU_0485	Pyruvate synthase; Identified by match to protein family HMM PF01558; match to protein family HMM PF01855.	Succinate dehydrogenase, flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM PF07992; match to protein family HMM TIGR01812; match to protein family HMM TIGR01816.	0.778
SRU_0423	sdhB	SRU_0423	SRU_0484	Pyruvate synthase; Identified by match to protein family HMM PF01558; match to protein family HMM PF01855.	Succinate dehydrogenase, iron-sulfur protein; Identified by match to protein family HMM PF00037; match to protein family HMM TIGR00384.	0.684
SRU_0423	yfcX	SRU_0423	SRU_1459	Pyruvate synthase; Identified by match to protein family HMM PF01558; match to protein family HMM PF01855.	Fatty oxidation complex, alpha subunit; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family.	0.427
SRU_0424	SRU_0423	SRU_0424	SRU_0423	2-oxoacid:ferredoxin oxidoreductase, beta subunit; Identified by match to protein family HMM PF02775.	Pyruvate synthase; Identified by match to protein family HMM PF01558; match to protein family HMM PF01855.	0.999
SRU_0424	SRU_1246	SRU_0424	SRU_1246	2-oxoacid:ferredoxin oxidoreductase, beta subunit; Identified by match to protein family HMM PF02775.	3-hydroxy-3-methylglutaryl-CoA lyase; Identified by match to protein family HMM PF00682.	0.910
SRU_0424	SRU_1344	SRU_0424	SRU_1344	2-oxoacid:ferredoxin oxidoreductase, beta subunit; Identified by match to protein family HMM PF02775.	Aldehyde dehydrogenase-like protein yneI; Identified by match to protein family HMM PF00171.	0.812
SRU_0424	SRU_1547	SRU_0424	SRU_1547	2-oxoacid:ferredoxin oxidoreductase, beta subunit; Identified by match to protein family HMM PF02775.	acetyl-CoA acetyltransferase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.905