(20 nodes) Opsins, and Asteroid domain network (Takifugu rubripes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rrh	Retinal pigment epithelium-derived rhodopsin homolog; Belongs to the G-protein coupled receptor 1 family. (333 aa)
	ENSTRUP00000005113	Prickle homolog 3. (527 aa)
	LOC101075984	Opsin 8, group member a; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (358 aa)
	LOC101067510	G_PROTEIN_RECEP_F1_2 domain-containing protein. (405 aa)
	LOC101076220	Opsin 4xb. (525 aa)
	aste1	XPG_I_2 domain-containing protein. (726 aa)
	LOC101074252	Retinal G protein coupled receptor a. (295 aa)
	LOC101075804	Vertebrate ancient long opsin b. (390 aa)
	H2TRS2_TAKRU	Dexi homolog (mouse). (94 aa)
	otx1	Orthodenticle homeobox 1. (332 aa)
	opn4	Opsin 4a (melanopsin). (498 aa)
	opn3	Opsin 3. (387 aa)
	LOC101070377	Opsin 1 (cone pigments), long-wave-sensitive, 1. (357 aa)
	opn5	Opsin 5; Belongs to the G-protein coupled receptor 1 family. (394 aa)
	medag	Uncharacterized protein. (222 aa)
	rd3l	Uncharacterized protein. (219 aa)
	LOC101080046	Opsin 4xa. (423 aa)
	LOC105418375	Melanopsin-A-like isoform X1. (548 aa)
	ENSTRUP00000080627	Melanopsin-A-like isoform X1. (275 aa)
	prdm5	Zinc finger protein. (631 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000005113	opn3	ENSTRUP00000005113	ENSTRUP00000029288	Prickle homolog 3.	Opsin 3.	0.650
ENSTRUP00000080627	LOC101070377	ENSTRUP00000080627	ENSTRUP00000033120	Melanopsin-A-like isoform X1.	Opsin 1 (cone pigments), long-wave-sensitive, 1.	0.403
ENSTRUP00000080627	LOC101074252	ENSTRUP00000080627	ENSTRUP00000024127	Melanopsin-A-like isoform X1.	Retinal G protein coupled receptor a.	0.428
ENSTRUP00000080627	opn3	ENSTRUP00000080627	ENSTRUP00000029288	Melanopsin-A-like isoform X1.	Opsin 3.	0.464
H2TRS2_TAKRU	LOC101067510	ENSTRUP00000027379	ENSTRUP00000014912	Dexi homolog (mouse).	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.400
H2TRS2_TAKRU	rd3l	ENSTRUP00000027379	ENSTRUP00000052054	Dexi homolog (mouse).	Uncharacterized protein.	0.606
H2TRS2_TAKRU	rrh	ENSTRUP00000027379	ENSTRUP00000004550	Dexi homolog (mouse).	Retinal pigment epithelium-derived rhodopsin homolog; Belongs to the G-protein coupled receptor 1 family.	0.400
LOC101067510	H2TRS2_TAKRU	ENSTRUP00000014912	ENSTRUP00000027379	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Dexi homolog (mouse).	0.400
LOC101067510	LOC101070377	ENSTRUP00000014912	ENSTRUP00000033120	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Opsin 1 (cone pigments), long-wave-sensitive, 1.	0.449
LOC101067510	LOC101074252	ENSTRUP00000014912	ENSTRUP00000024127	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Retinal G protein coupled receptor a.	0.572
LOC101067510	LOC101075804	ENSTRUP00000014912	ENSTRUP00000025353	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Vertebrate ancient long opsin b.	0.484
LOC101067510	LOC101075984	ENSTRUP00000014912	ENSTRUP00000009737	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Opsin 8, group member a; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.	0.401
LOC101067510	opn3	ENSTRUP00000014912	ENSTRUP00000029288	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Opsin 3.	0.494
LOC101067510	rd3l	ENSTRUP00000014912	ENSTRUP00000052054	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Uncharacterized protein.	0.433
LOC101070377	ENSTRUP00000080627	ENSTRUP00000033120	ENSTRUP00000080627	Opsin 1 (cone pigments), long-wave-sensitive, 1.	Melanopsin-A-like isoform X1.	0.403
LOC101070377	LOC101067510	ENSTRUP00000033120	ENSTRUP00000014912	Opsin 1 (cone pigments), long-wave-sensitive, 1.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.449
LOC101070377	LOC101074252	ENSTRUP00000033120	ENSTRUP00000024127	Opsin 1 (cone pigments), long-wave-sensitive, 1.	Retinal G protein coupled receptor a.	0.652
LOC101070377	LOC105418375	ENSTRUP00000033120	ENSTRUP00000075363	Opsin 1 (cone pigments), long-wave-sensitive, 1.	Melanopsin-A-like isoform X1.	0.411
LOC101070377	opn3	ENSTRUP00000033120	ENSTRUP00000029288	Opsin 1 (cone pigments), long-wave-sensitive, 1.	Opsin 3.	0.545
LOC101070377	otx1	ENSTRUP00000033120	ENSTRUP00000027897	Opsin 1 (cone pigments), long-wave-sensitive, 1.	Orthodenticle homeobox 1.	0.451