(26 nodes) Mixed, incl. Cytosolic large ribosomal subunit, and Cytoplasmic side of rough endoplasmic reticulum membrane network (Takifugu rubripes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpl27	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (162 aa)
	rpl35a	Ribosomal protein L35a. (110 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	rpl21	Ribosomal protein L21. (160 aa)
	rpl31	Ribosomal protein L31. (127 aa)
	Rpl39	Ribosomal protein L39. (52 aa)
	RPS29	Ribosomal protein S29. (100 aa)
	rpl14	Ribosomal_L14e domain-containing protein. (138 aa)
	rpl4	Ribosomal protein L4. (369 aa)
	rpl6	Ribosomal protein L6. (258 aa)
	rpl37	Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
	rpl13	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (235 aa)
	rpl15	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	rpl17	Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (184 aa)
	rpl9	Ribosomal protein L9. (211 aa)
	rpl8	Ribosomal protein L8. (276 aa)
	rpl34	Ribosomal protein L34. (117 aa)
	rpl28	Ribosomal protein L28. (137 aa)
	rpl18	Ribosomal protein L18. (223 aa)
	rpl30	Ribosomal protein L30. (116 aa)
	rpl32	Ribosomal protein L32. (140 aa)
	LOC101067942	Ribosomal protein L26. (145 aa)
	RPL7A	60S ribosomal protein L7a; Belongs to the eukaryotic ribosomal protein eL8 family. (242 aa)
	rpl36a	60S ribosomal protein L36a. (156 aa)
	rpl24	Ribosomal protein L24. (223 aa)
	RPL27A	Ribosomal protein L27a. (147 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101067942	RPL27A	ENSTRUP00000074869	ENSTRUP00000084700	Ribosomal protein L26.	Ribosomal protein L27a.	0.999
LOC101067942	RPL7A	ENSTRUP00000074869	ENSTRUP00000075237	Ribosomal protein L26.	60S ribosomal protein L7a; Belongs to the eukaryotic ribosomal protein eL8 family.	0.999
LOC101067942	RPS29	ENSTRUP00000074869	ENSTRUP00000031229	Ribosomal protein L26.	Ribosomal protein S29.	0.999
LOC101067942	Rpl39	ENSTRUP00000074869	ENSTRUP00000027356	Ribosomal protein L26.	Ribosomal protein L39.	0.999
LOC101067942	rpl13	ENSTRUP00000074869	ENSTRUP00000049473	Ribosomal protein L26.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
LOC101067942	rpl14	ENSTRUP00000074869	ENSTRUP00000033907	Ribosomal protein L26.	Ribosomal_L14e domain-containing protein.	0.999
LOC101067942	rpl15	ENSTRUP00000074869	ENSTRUP00000055047	Ribosomal protein L26.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
LOC101067942	rpl17	ENSTRUP00000074869	ENSTRUP00000055882	Ribosomal protein L26.	Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family.	0.999
LOC101067942	rpl18	ENSTRUP00000074869	ENSTRUP00000068515	Ribosomal protein L26.	Ribosomal protein L18.	0.999
LOC101067942	rpl21	ENSTRUP00000074869	ENSTRUP00000012160	Ribosomal protein L26.	Ribosomal protein L21.	0.999
LOC101067942	rpl24	ENSTRUP00000074869	ENSTRUP00000084065	Ribosomal protein L26.	Ribosomal protein L24.	0.999
LOC101067942	rpl27	ENSTRUP00000074869	ENSTRUP00000000387	Ribosomal protein L26.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.999
LOC101067942	rpl28	ENSTRUP00000074869	ENSTRUP00000064105	Ribosomal protein L26.	Ribosomal protein L28.	0.999
LOC101067942	rpl30	ENSTRUP00000074869	ENSTRUP00000071256	Ribosomal protein L26.	Ribosomal protein L30.	0.999
LOC101067942	rpl31	ENSTRUP00000074869	ENSTRUP00000018189	Ribosomal protein L26.	Ribosomal protein L31.	0.999
LOC101067942	rpl32	ENSTRUP00000074869	ENSTRUP00000072808	Ribosomal protein L26.	Ribosomal protein L32.	0.999
LOC101067942	rpl34	ENSTRUP00000074869	ENSTRUP00000063910	Ribosomal protein L26.	Ribosomal protein L34.	0.999
LOC101067942	rpl35a	ENSTRUP00000074869	ENSTRUP00000008322	Ribosomal protein L26.	Ribosomal protein L35a.	0.999
LOC101067942	rpl36a	ENSTRUP00000074869	ENSTRUP00000078404	Ribosomal protein L26.	60S ribosomal protein L36a.	0.999
LOC101067942	rpl37	ENSTRUP00000074869	ENSTRUP00000046263	Ribosomal protein L26.	Ribosomal protein L37; Binds to the 23S rRNA.	0.999