(10 nodes) Mixed, incl. Translation protein SH3-like domain superfamily, and Ribosomal protein L18e/L15P network (Takifugu rubripes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	rpl21	Ribosomal protein L21. (160 aa)
	rpl31	Ribosomal protein L31. (127 aa)
	rpl14	Ribosomal_L14e domain-containing protein. (138 aa)
	rpl15	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	rpl8	Ribosomal protein L8. (276 aa)
	rpl18	Ribosomal protein L18. (223 aa)
	rpl32	Ribosomal protein L32. (140 aa)
	rpl36a	60S ribosomal protein L36a. (156 aa)
	rpl24	Ribosomal protein L24. (223 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rpl14	rpl15	ENSTRUP00000033907	ENSTRUP00000055047	Ribosomal_L14e domain-containing protein.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
rpl14	rpl18	ENSTRUP00000033907	ENSTRUP00000068515	Ribosomal_L14e domain-containing protein.	Ribosomal protein L18.	0.999
rpl14	rpl21	ENSTRUP00000033907	ENSTRUP00000012160	Ribosomal_L14e domain-containing protein.	Ribosomal protein L21.	0.999
rpl14	rpl24	ENSTRUP00000033907	ENSTRUP00000084065	Ribosomal_L14e domain-containing protein.	Ribosomal protein L24.	0.999
rpl14	rpl31	ENSTRUP00000033907	ENSTRUP00000018189	Ribosomal_L14e domain-containing protein.	Ribosomal protein L31.	0.999
rpl14	rpl32	ENSTRUP00000033907	ENSTRUP00000072808	Ribosomal_L14e domain-containing protein.	Ribosomal protein L32.	0.999
rpl14	rpl36a	ENSTRUP00000033907	ENSTRUP00000078404	Ribosomal_L14e domain-containing protein.	60S ribosomal protein L36a.	0.999
rpl14	rpl8	ENSTRUP00000033907	ENSTRUP00000057980	Ribosomal_L14e domain-containing protein.	Ribosomal protein L8.	0.999
rpl14	uba52	ENSTRUP00000033907	ENSTRUP00000009801	Ribosomal_L14e domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.999
rpl15	rpl14	ENSTRUP00000055047	ENSTRUP00000033907	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	Ribosomal_L14e domain-containing protein.	0.999
rpl15	rpl18	ENSTRUP00000055047	ENSTRUP00000068515	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	Ribosomal protein L18.	0.999
rpl15	rpl21	ENSTRUP00000055047	ENSTRUP00000012160	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	Ribosomal protein L21.	0.999
rpl15	rpl24	ENSTRUP00000055047	ENSTRUP00000084065	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	Ribosomal protein L24.	0.999
rpl15	rpl31	ENSTRUP00000055047	ENSTRUP00000018189	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	Ribosomal protein L31.	0.999
rpl15	rpl32	ENSTRUP00000055047	ENSTRUP00000072808	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	Ribosomal protein L32.	0.999
rpl15	rpl36a	ENSTRUP00000055047	ENSTRUP00000078404	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	60S ribosomal protein L36a.	0.999
rpl15	rpl8	ENSTRUP00000055047	ENSTRUP00000057980	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	Ribosomal protein L8.	0.999
rpl15	uba52	ENSTRUP00000055047	ENSTRUP00000009801	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.999
rpl18	rpl14	ENSTRUP00000068515	ENSTRUP00000033907	Ribosomal protein L18.	Ribosomal_L14e domain-containing protein.	0.999
rpl18	rpl15	ENSTRUP00000068515	ENSTRUP00000055047	Ribosomal protein L18.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999