(10 nodes) Cytosolic large ribosomal subunit, and KOW (Kyprides, Ouzounis, Woese) motif. network (Takifugu rubripes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpl27	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (162 aa)
	rpl35a	Ribosomal protein L35a. (110 aa)
	rpl4	Ribosomal protein L4. (369 aa)
	rpl37	Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
	rpl17	Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (184 aa)
	rpl9	Ribosomal protein L9. (211 aa)
	rpl34	Ribosomal protein L34. (117 aa)
	rpl30	Ribosomal protein L30. (116 aa)
	RPL7A	60S ribosomal protein L7a; Belongs to the eukaryotic ribosomal protein eL8 family. (242 aa)
	RPL27A	Ribosomal protein L27a. (147 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPL27A	RPL7A	ENSTRUP00000084700	ENSTRUP00000075237	Ribosomal protein L27a.	60S ribosomal protein L7a; Belongs to the eukaryotic ribosomal protein eL8 family.	0.999
RPL27A	rpl17	ENSTRUP00000084700	ENSTRUP00000055882	Ribosomal protein L27a.	Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family.	0.999
RPL27A	rpl27	ENSTRUP00000084700	ENSTRUP00000000387	Ribosomal protein L27a.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.999
RPL27A	rpl30	ENSTRUP00000084700	ENSTRUP00000071256	Ribosomal protein L27a.	Ribosomal protein L30.	0.999
RPL27A	rpl34	ENSTRUP00000084700	ENSTRUP00000063910	Ribosomal protein L27a.	Ribosomal protein L34.	0.999
RPL27A	rpl35a	ENSTRUP00000084700	ENSTRUP00000008322	Ribosomal protein L27a.	Ribosomal protein L35a.	0.999
RPL27A	rpl37	ENSTRUP00000084700	ENSTRUP00000046263	Ribosomal protein L27a.	Ribosomal protein L37; Binds to the 23S rRNA.	0.999
RPL27A	rpl4	ENSTRUP00000084700	ENSTRUP00000037473	Ribosomal protein L27a.	Ribosomal protein L4.	0.999
RPL27A	rpl9	ENSTRUP00000084700	ENSTRUP00000057540	Ribosomal protein L27a.	Ribosomal protein L9.	0.999
RPL7A	RPL27A	ENSTRUP00000075237	ENSTRUP00000084700	60S ribosomal protein L7a; Belongs to the eukaryotic ribosomal protein eL8 family.	Ribosomal protein L27a.	0.999
RPL7A	rpl17	ENSTRUP00000075237	ENSTRUP00000055882	60S ribosomal protein L7a; Belongs to the eukaryotic ribosomal protein eL8 family.	Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family.	0.999
RPL7A	rpl27	ENSTRUP00000075237	ENSTRUP00000000387	60S ribosomal protein L7a; Belongs to the eukaryotic ribosomal protein eL8 family.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.999
RPL7A	rpl30	ENSTRUP00000075237	ENSTRUP00000071256	60S ribosomal protein L7a; Belongs to the eukaryotic ribosomal protein eL8 family.	Ribosomal protein L30.	0.999
RPL7A	rpl34	ENSTRUP00000075237	ENSTRUP00000063910	60S ribosomal protein L7a; Belongs to the eukaryotic ribosomal protein eL8 family.	Ribosomal protein L34.	0.999
RPL7A	rpl35a	ENSTRUP00000075237	ENSTRUP00000008322	60S ribosomal protein L7a; Belongs to the eukaryotic ribosomal protein eL8 family.	Ribosomal protein L35a.	0.999
RPL7A	rpl37	ENSTRUP00000075237	ENSTRUP00000046263	60S ribosomal protein L7a; Belongs to the eukaryotic ribosomal protein eL8 family.	Ribosomal protein L37; Binds to the 23S rRNA.	0.999
RPL7A	rpl4	ENSTRUP00000075237	ENSTRUP00000037473	60S ribosomal protein L7a; Belongs to the eukaryotic ribosomal protein eL8 family.	Ribosomal protein L4.	0.999
RPL7A	rpl9	ENSTRUP00000075237	ENSTRUP00000057540	60S ribosomal protein L7a; Belongs to the eukaryotic ribosomal protein eL8 family.	Ribosomal protein L9.	0.999
rpl17	RPL27A	ENSTRUP00000055882	ENSTRUP00000084700	Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family.	Ribosomal protein L27a.	0.999
rpl17	RPL7A	ENSTRUP00000055882	ENSTRUP00000075237	Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family.	60S ribosomal protein L7a; Belongs to the eukaryotic ribosomal protein eL8 family.	0.999