5 items (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cops2	COP9 signalosome subunit 2. (483 aa)
	cops4	COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis). (415 aa)
	cops8	COP9 signalosome subunit 8. (216 aa)
	gps1	G protein pathway suppressor 1. (500 aa)
	cops3	COP9 signalosome subunit 3. (430 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cops2	cops3	ENSTRUP00000043337	ENSTRUP00000082863	COP9 signalosome subunit 2.	COP9 signalosome subunit 3.	0.999
cops2	cops4	ENSTRUP00000043337	ENSTRUP00000053695	COP9 signalosome subunit 2.	COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).	0.999
cops2	cops8	ENSTRUP00000043337	ENSTRUP00000059629	COP9 signalosome subunit 2.	COP9 signalosome subunit 8.	0.999
cops2	gps1	ENSTRUP00000043337	ENSTRUP00000073121	COP9 signalosome subunit 2.	G protein pathway suppressor 1.	0.999
cops3	cops2	ENSTRUP00000082863	ENSTRUP00000043337	COP9 signalosome subunit 3.	COP9 signalosome subunit 2.	0.999
cops3	cops4	ENSTRUP00000082863	ENSTRUP00000053695	COP9 signalosome subunit 3.	COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).	0.999
cops3	cops8	ENSTRUP00000082863	ENSTRUP00000059629	COP9 signalosome subunit 3.	COP9 signalosome subunit 8.	0.999
cops3	gps1	ENSTRUP00000082863	ENSTRUP00000073121	COP9 signalosome subunit 3.	G protein pathway suppressor 1.	0.999
cops4	cops2	ENSTRUP00000053695	ENSTRUP00000043337	COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).	COP9 signalosome subunit 2.	0.999
cops4	cops3	ENSTRUP00000053695	ENSTRUP00000082863	COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).	COP9 signalosome subunit 3.	0.999
cops4	cops8	ENSTRUP00000053695	ENSTRUP00000059629	COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).	COP9 signalosome subunit 8.	0.999
cops4	gps1	ENSTRUP00000053695	ENSTRUP00000073121	COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).	G protein pathway suppressor 1.	0.999
cops8	cops2	ENSTRUP00000059629	ENSTRUP00000043337	COP9 signalosome subunit 8.	COP9 signalosome subunit 2.	0.999
cops8	cops3	ENSTRUP00000059629	ENSTRUP00000082863	COP9 signalosome subunit 8.	COP9 signalosome subunit 3.	0.999
cops8	cops4	ENSTRUP00000059629	ENSTRUP00000053695	COP9 signalosome subunit 8.	COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).	0.999
cops8	gps1	ENSTRUP00000059629	ENSTRUP00000073121	COP9 signalosome subunit 8.	G protein pathway suppressor 1.	0.999
gps1	cops2	ENSTRUP00000073121	ENSTRUP00000043337	G protein pathway suppressor 1.	COP9 signalosome subunit 2.	0.999
gps1	cops3	ENSTRUP00000073121	ENSTRUP00000082863	G protein pathway suppressor 1.	COP9 signalosome subunit 3.	0.999
gps1	cops4	ENSTRUP00000073121	ENSTRUP00000053695	G protein pathway suppressor 1.	COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).	0.999
gps1	cops8	ENSTRUP00000073121	ENSTRUP00000059629	G protein pathway suppressor 1.	COP9 signalosome subunit 8.	0.999