42 items (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	faf1	Fas (TNFRSF6) associated factor 1. (669 aa)
	LOC101077113	Si:dkey-24p1.6. (1047 aa)
	plaa	Phospholipase A2-activating protein. (796 aa)
	rnf139	Ring finger protein 139. (702 aa)
	ubxn2a	UBX domain protein 2A. (245 aa)
	LOC101073729	Ataxin 3. (223 aa)
	LOC101072295	Nuclear VCP like; Belongs to the AAA ATPase family. (860 aa)
	aup1	AUP1 lipid droplet regulating VLDL assembly factor. (411 aa)
	nsfl1c	NSFL1 (p97) cofactor (p47). (372 aa)
	LOC101062733	Zmp:0000000662. (724 aa)
	ubac2	UBA domain containing 2. (353 aa)
	faf2	Fas associated factor family member 2. (445 aa)
	yod1	YOD1 deubiquitinase. (306 aa)
	ubxn11	UBX domain protein 11. (421 aa)
	chfr	Checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase. (627 aa)
	LOC105417910	Uncharacterized protein. (848 aa)
	sel1l	SEL1L adaptor subunit of ERAD E3 ubiquitin ligase. (823 aa)
	rnf145	Ring finger protein 145b. (736 aa)
	ubqln4	Ubiquilin 4. (631 aa)
	ubxn1	UBX domain protein 1. (314 aa)
	UBXN4	UBX domain protein 4. (494 aa)
	ube4a	Ubiquitination factor E4A (UFD2 homolog, yeast). (1078 aa)
	erlec1	Endoplasmic reticulum lectin 1. (455 aa)
	FAAP100	Uncharacterized protein. (824 aa)
	spata5l1	Spermatogenesis associated 5-like 1. (746 aa)
	vcp	Valosin containing protein; Belongs to the AAA ATPase family. (819 aa)
	ubxn6	UBX domain protein 6. (437 aa)
	LOC101076602	Cytochrome c oxidase assembly factor 7. (230 aa)
	dele1	Uncharacterized protein. (526 aa)
	derl2	Derlin-2/3. (239 aa)
	svip	Si:ch73-147o17.1. (115 aa)
	LOC115248097	Peptide-N(4)-(N-acetyl-beta- glucosaminyl)asparagine amidase-like. (635 aa)
	UBXN7	UBX domain protein 7. (521 aa)
	SPATA5	ATPase family protein 2 homolog. (889 aa)
	hm13	Histocompatibility (minor) 13. (417 aa)
	ube4b	Ubiquitination factor E4B, UFD2 homolog (S. cerevisiae). (1378 aa)
	os9	OS9 endoplasmic reticulum lectin. (656 aa)
	NGLY1	N-glycanase 1. (635 aa)
	syvn1	Synovial apoptosis inhibitor 1, synoviolin. (625 aa)
	ENSTRUP00000080100	Nuclear VCP like. (860 aa)
	aspscr1	ASPSCR1 tether for SLC2A4, UBX domain containing. (618 aa)
	amfr	Autocrine motility factor receptor b. (645 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000080100	FAAP100	ENSTRUP00000080100	ENSTRUP00000042865	Nuclear VCP like.	Uncharacterized protein.	0.698
ENSTRUP00000080100	LOC101062733	ENSTRUP00000080100	ENSTRUP00000023024	Nuclear VCP like.	Zmp:0000000662.	0.459
ENSTRUP00000080100	LOC101073729	ENSTRUP00000080100	ENSTRUP00000013923	Nuclear VCP like.	Ataxin 3.	0.645
ENSTRUP00000080100	LOC101076602	ENSTRUP00000080100	ENSTRUP00000047252	Nuclear VCP like.	Cytochrome c oxidase assembly factor 7.	0.410
ENSTRUP00000080100	LOC101077113	ENSTRUP00000080100	ENSTRUP00000004620	Nuclear VCP like.	Si:dkey-24p1.6.	0.410
ENSTRUP00000080100	LOC105417910	ENSTRUP00000080100	ENSTRUP00000034263	Nuclear VCP like.	Uncharacterized protein.	0.410
ENSTRUP00000080100	LOC115248097	ENSTRUP00000080100	ENSTRUP00000065255	Nuclear VCP like.	Peptide-N(4)-(N-acetyl-beta- glucosaminyl)asparagine amidase-like.	0.509
ENSTRUP00000080100	NGLY1	ENSTRUP00000080100	ENSTRUP00000076981	Nuclear VCP like.	N-glycanase 1.	0.509
ENSTRUP00000080100	UBXN4	ENSTRUP00000080100	ENSTRUP00000038224	Nuclear VCP like.	UBX domain protein 4.	0.470
ENSTRUP00000080100	UBXN7	ENSTRUP00000080100	ENSTRUP00000065925	Nuclear VCP like.	UBX domain protein 7.	0.909
ENSTRUP00000080100	amfr	ENSTRUP00000080100	ENSTRUP00000087254	Nuclear VCP like.	Autocrine motility factor receptor b.	0.459
ENSTRUP00000080100	aspscr1	ENSTRUP00000080100	ENSTRUP00000082456	Nuclear VCP like.	ASPSCR1 tether for SLC2A4, UBX domain containing.	0.449
ENSTRUP00000080100	chfr	ENSTRUP00000080100	ENSTRUP00000033200	Nuclear VCP like.	Checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase.	0.459
ENSTRUP00000080100	dele1	ENSTRUP00000080100	ENSTRUP00000049527	Nuclear VCP like.	Uncharacterized protein.	0.410
ENSTRUP00000080100	derl2	ENSTRUP00000080100	ENSTRUP00000049739	Nuclear VCP like.	Derlin-2/3.	0.727
ENSTRUP00000080100	erlec1	ENSTRUP00000080100	ENSTRUP00000041929	Nuclear VCP like.	Endoplasmic reticulum lectin 1.	0.605
ENSTRUP00000080100	faf1	ENSTRUP00000080100	ENSTRUP00000004343	Nuclear VCP like.	Fas (TNFRSF6) associated factor 1.	0.537
ENSTRUP00000080100	faf2	ENSTRUP00000080100	ENSTRUP00000028320	Nuclear VCP like.	Fas associated factor family member 2.	0.537
ENSTRUP00000080100	nsfl1c	ENSTRUP00000080100	ENSTRUP00000019542	Nuclear VCP like.	NSFL1 (p97) cofactor (p47).	0.523
ENSTRUP00000080100	os9	ENSTRUP00000080100	ENSTRUP00000075968	Nuclear VCP like.	OS9 endoplasmic reticulum lectin.	0.605