47 items (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101074250	RAP1A, member of RAS oncogene family a. (185 aa)
	LOC101070538	RAB1A, member RAS oncogene family. (216 aa)
	LOC101079292	RERG/RAS-like b. (207 aa)
	LOC101078239	RAB5A, member RAS oncogene family, b. (216 aa)
	LOC101068145	Uncharacterized protein. (191 aa)
	LOC101067723	Cell division cycle 42. (191 aa)
	LOC101073733	Uncharacterized protein. (202 aa)
	LOC101072093	RAB5B, member RAS oncogene family. (216 aa)
	LOC101065023	Ras-related protein Rab-11B-like. (238 aa)
	rap1a	Uncharacterized protein. (145 aa)
	rap2a	RAP2A, member of RAS oncogene family. (183 aa)
	LOC101077537	Uncharacterized protein. (219 aa)
	LOC101071476	RAB27B, member RAS oncogene family. (223 aa)
	rap2c	RAP2C, member of RAS oncogene family. (183 aa)
	rab4a	RAB4a, member RAS oncogene family. (221 aa)
	LOC101071138	RAB5A, member RAS oncogene family, a. (245 aa)
	LOC101073559	RAB11a, member RAS oncogene family, like. (227 aa)
	LOC101072783	RAB4B, member RAS oncogene family. (219 aa)
	LOC115253205	PiggyBac transposable element-derived protein 4-like. (411 aa)
	LOC101068869	Ras-related protein Rap-2b-like. (182 aa)
	LOC101061812	RAB7A, member RAS oncogene family. (207 aa)
	LOC101061347	Si:dkeyp-59c12.1. (246 aa)
	LOC101070080	Uncharacterized protein. (184 aa)
	LOC101068809	ADP-ribosylation factor 6b; Belongs to the small GTPase superfamily. Arf family. (175 aa)
	kras	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog. (210 aa)
	LOC101064935	Uncharacterized protein. (185 aa)
	LOC101065425	Uncharacterized protein. (201 aa)
	rab1a	Uncharacterized protein. (206 aa)
	rab11a	RAB11a, member RAS oncogene family. (215 aa)
	LOC101069188	Uncharacterized protein. (221 aa)
	RERG	RAS like estrogen regulated growth inhibitor. (194 aa)
	LOC101073928	Uncharacterized protein. (218 aa)
	LOC101072699	ZRAB1B, member RAS oncogene family a. (228 aa)
	mras	Muscle RAS oncogene homolog. (208 aa)
	LOC101069736	Zgc:55558. (187 aa)
	ENSTRUP00000047861	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (193 aa)
	LOC101074373	Uncharacterized protein. (216 aa)
	rab27a	RAB27A, member RAS oncogene family. (220 aa)
	LOC101067730	Uncharacterized protein. (221 aa)
	rab5c	RAB5C, member RAS oncogene family. (220 aa)
	rasl11b	RAS-like, family 11, member B. (248 aa)
	rap2b	RAP2B, member of RAS oncogene family. (183 aa)
	rala	V-ral simian leukemia viral oncogene homolog Aa (ras related). (202 aa)
	LOC101076529	RAB7a, member RAS oncogene family. (207 aa)
	rasl11a	RAS-like, family 11, member A. (256 aa)
	RAB17	RAB17, member RAS oncogene family. (265 aa)
	LOC101079195	V-ral simian leukemia viral oncogene homolog Ba (ras related). (233 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000047861	LOC101072783	ENSTRUP00000047861	ENSTRUP00000067803	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	RAB4B, member RAS oncogene family.	0.469
ENSTRUP00000047861	rab4a	ENSTRUP00000047861	ENSTRUP00000069147	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	RAB4a, member RAS oncogene family.	0.469
LOC101061812	LOC101065023	ENSTRUP00000058310	ENSTRUP00000074121	RAB7A, member RAS oncogene family.	Ras-related protein Rab-11B-like.	0.432
LOC101061812	LOC101067723	ENSTRUP00000058310	ENSTRUP00000078989	RAB7A, member RAS oncogene family.	Cell division cycle 42.	0.508
LOC101061812	LOC101068145	ENSTRUP00000058310	ENSTRUP00000080891	RAB7A, member RAS oncogene family.	Uncharacterized protein.	0.480
LOC101061812	LOC101069188	ENSTRUP00000058310	ENSTRUP00000049437	RAB7A, member RAS oncogene family.	Uncharacterized protein.	0.427
LOC101061812	LOC101071138	ENSTRUP00000058310	ENSTRUP00000068368	RAB7A, member RAS oncogene family.	RAB5A, member RAS oncogene family, a.	0.431
LOC101061812	LOC101072093	ENSTRUP00000058310	ENSTRUP00000074234	RAB7A, member RAS oncogene family.	RAB5B, member RAS oncogene family.	0.429
LOC101061812	LOC101072783	ENSTRUP00000058310	ENSTRUP00000067803	RAB7A, member RAS oncogene family.	RAB4B, member RAS oncogene family.	0.416
LOC101061812	LOC101073559	ENSTRUP00000058310	ENSTRUP00000067917	RAB7A, member RAS oncogene family.	RAB11a, member RAS oncogene family, like.	0.431
LOC101061812	LOC101073733	ENSTRUP00000058310	ENSTRUP00000078185	RAB7A, member RAS oncogene family.	Uncharacterized protein.	0.508
LOC101061812	LOC101073928	ENSTRUP00000058310	ENSTRUP00000000483	RAB7A, member RAS oncogene family.	Uncharacterized protein.	0.430
LOC101061812	LOC101074373	ENSTRUP00000058310	ENSTRUP00000046758	RAB7A, member RAS oncogene family.	Uncharacterized protein.	0.431
LOC101061812	LOC101076529	ENSTRUP00000058310	ENSTRUP00000025363	RAB7A, member RAS oncogene family.	RAB7a, member RAS oncogene family.	0.900
LOC101061812	LOC101078239	ENSTRUP00000058310	ENSTRUP00000082757	RAB7A, member RAS oncogene family.	RAB5A, member RAS oncogene family, b.	0.430
LOC101061812	RAB17	ENSTRUP00000058310	ENSTRUP00000021192	RAB7A, member RAS oncogene family.	RAB17, member RAS oncogene family.	0.445
LOC101061812	rab11a	ENSTRUP00000058310	ENSTRUP00000049752	RAB7A, member RAS oncogene family.	RAB11a, member RAS oncogene family.	0.426
LOC101061812	rab4a	ENSTRUP00000058310	ENSTRUP00000069147	RAB7A, member RAS oncogene family.	RAB4a, member RAS oncogene family.	0.416
LOC101061812	rab5c	ENSTRUP00000058310	ENSTRUP00000039854	RAB7A, member RAS oncogene family.	RAB5C, member RAS oncogene family.	0.426
LOC101064935	LOC101065425	ENSTRUP00000052446	ENSTRUP00000050587	Uncharacterized protein.	Uncharacterized protein.	0.406