(27 nodes) Retina layer formation network (Takifugu rubripes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SDK1	Sidekick cell adhesion molecule 1. (2155 aa)
	lhx1	LIM homeobox 1a. (408 aa)
	crb1	Crumbs cell polarity complex component 1. (1320 aa)
	crb2	Crumbs cell polarity complex component 2b. (1419 aa)
	H2S4Y9_TAKRU	Immunoglobulin like and fibronectin type III domain containing 1, tandem duplicate 1. (594 aa)
	fjx1	Four-jointed box kinase 1. (401 aa)
	rtn4ip1	Reticulon 4 interacting protein 1. (413 aa)
	LOC101071119	Blood vessel epicardial substance. (360 aa)
	LOC101072911	Sidekick cell adhesion molecule 2a. (2228 aa)
	LOC101073544	Retinal homeobox gene 1. (350 aa)
	rp2	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization. (368 aa)
	LOC101071431	Uncharacterized protein. (1428 aa)
	foxn4	Forkhead box N4. (516 aa)
	LOC100137129	POC1 centriolar protein B. (501 aa)
	atoh7	Atonal bHLH transcription factor 7. (143 aa)
	LOC101077216	Immunoglobulin like and fibronectin type III domain containing 1, tandem duplicate 3. (1229 aa)
	tspan12	Tetraspanin. (327 aa)
	LOC101077138	Uncharacterized protein. (1053 aa)
	ENSTRUP00000062762	annotation not available (1067 aa)
	ahi1	Abelson helper integration site 1. (1182 aa)
	tatdn1	TatD DNase domain containing 1. (312 aa)
	abhd12	Abhydrolase domain containing 12. (384 aa)
	LOC115248628	Blood vessel epicardial substance-like. (360 aa)
	ENSTRUP00000072003	Immunoglobulin-like and fibronectin type III domain-containing protein 1 isoform X1. (714 aa)
	ENSTRUP00000072542	Uncharacterized protein. (1168 aa)
	ENSTRUP00000078928	annotation not available (394 aa)
	fat3	FAT atypical cadherin 3a. (4647 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000072003	H2S4Y9_TAKRU	ENSTRUP00000072003	ENSTRUP00000007461	Immunoglobulin-like and fibronectin type III domain-containing protein 1 isoform X1.	Immunoglobulin like and fibronectin type III domain containing 1, tandem duplicate 1.	0.783
H2S4Y9_TAKRU	ENSTRUP00000072003	ENSTRUP00000007461	ENSTRUP00000072003	Immunoglobulin like and fibronectin type III domain containing 1, tandem duplicate 1.	Immunoglobulin-like and fibronectin type III domain-containing protein 1 isoform X1.	0.783
atoh7	foxn4	ENSTRUP00000046025	ENSTRUP00000039542	Atonal bHLH transcription factor 7.	Forkhead box N4.	0.487
fat3	fjx1	ENSTRUP00000081250	ENSTRUP00000007477	FAT atypical cadherin 3a.	Four-jointed box kinase 1.	0.720
fjx1	fat3	ENSTRUP00000007477	ENSTRUP00000081250	Four-jointed box kinase 1.	FAT atypical cadherin 3a.	0.720
foxn4	atoh7	ENSTRUP00000039542	ENSTRUP00000046025	Forkhead box N4.	Atonal bHLH transcription factor 7.	0.487