34 items (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pax8	Paired box 8. (460 aa)
	agtpbp1	ATP/GTP binding protein 1. (1222 aa)
	LOC101072796	Si:ch73-21k16.5; Belongs to the GPAT/DAPAT family. (678 aa)
	H2VEC6_TAKRU	Growth arrest-specific 1b. (264 aa)
	LOC105418801	Si:ch211-160f23.7. (210 aa)
	LOC101066299	Whirlin a. (478 aa)
	lhx1	LIM homeobox 1a. (408 aa)
	ENSTRUP00000077170	annotation not available (240 aa)
	smo	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family. (810 aa)
	LOC115249539	Uncharacterized protein. (423 aa)
	wdr73	Uncharacterized protein. (369 aa)
	LOC115252115	Growth arrest-specific protein 1-like. (259 aa)
	LOC105416327	Protein ZNF365. (451 aa)
	LOC101066034	DNA repair protein XRCC1. (620 aa)
	pax2	Paired box 2b. (395 aa)
	LOC105419521	Whirlin-like isoform X1. (979 aa)
	LOC101073512	Paired box 2a. (486 aa)
	hspa5	Heat shock protein 5; Belongs to the heat shock protein 70 family. (660 aa)
	ttll1	Tubulin tyrosine ligase-like family, member 1. (424 aa)
	H2RLT0_TAKRU	Tetratricopeptide repeat domain 21B. (1298 aa)
	LOC115250498	X-ray repair complementing defective repair in Chinese hamster cells 1. (620 aa)
	cdk5	Cyclin-dependent kinase 5. (292 aa)
	abl2	Tyrosine-protein kinase. (1214 aa)
	LOC101070979	RNA binding motif protein 7. (253 aa)
	fgf8	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (213 aa)
	pax5-2	Paired domain-containing protein. (178 aa)
	abl1	Tyrosine-protein kinase. (1115 aa)
	pax5	Paired domain-containing protein. (425 aa)
	Kndc1	LOW QUALITY PROTEIN: kinase non-catalytic C-lobe domain-containing protein 1. (546 aa)
	coq8b	Coenzyme Q8B. (605 aa)
	wnt1	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (370 aa)
	serpine2	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2; Belongs to the serpin family. (397 aa)
	LOC101078705	LIM homeobox 1b. (397 aa)
	kif14	Kinesin family member 14; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1335 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000077170	LOC101066299	ENSTRUP00000077170	ENSTRUP00000000469	annotation not available	Whirlin a.	0.440
ENSTRUP00000077170	LOC105419521	ENSTRUP00000077170	ENSTRUP00000067792	annotation not available	Whirlin-like isoform X1.	0.440
H2RLT0_TAKRU	LOC101066299	ENSTRUP00000001093	ENSTRUP00000000469	Tetratricopeptide repeat domain 21B.	Whirlin a.	0.440
H2RLT0_TAKRU	LOC105419521	ENSTRUP00000001093	ENSTRUP00000067792	Tetratricopeptide repeat domain 21B.	Whirlin-like isoform X1.	0.440
H2VEC6_TAKRU	LOC115252115	ENSTRUP00000047571	ENSTRUP00000074210	Growth arrest-specific 1b.	Growth arrest-specific protein 1-like.	0.905
H2VEC6_TAKRU	smo	ENSTRUP00000047571	ENSTRUP00000082901	Growth arrest-specific 1b.	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.	0.430
LOC101066299	ENSTRUP00000077170	ENSTRUP00000000469	ENSTRUP00000077170	Whirlin a.	annotation not available	0.440
LOC101066299	H2RLT0_TAKRU	ENSTRUP00000000469	ENSTRUP00000001093	Whirlin a.	Tetratricopeptide repeat domain 21B.	0.440
LOC105419521	ENSTRUP00000077170	ENSTRUP00000067792	ENSTRUP00000077170	Whirlin-like isoform X1.	annotation not available	0.440
LOC105419521	H2RLT0_TAKRU	ENSTRUP00000067792	ENSTRUP00000001093	Whirlin-like isoform X1.	Tetratricopeptide repeat domain 21B.	0.440
LOC115252115	H2VEC6_TAKRU	ENSTRUP00000074210	ENSTRUP00000047571	Growth arrest-specific protein 1-like.	Growth arrest-specific 1b.	0.905
LOC115252115	smo	ENSTRUP00000074210	ENSTRUP00000082901	Growth arrest-specific protein 1-like.	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.	0.430
abl1	abl2	ENSTRUP00000061821	ENSTRUP00000014750	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.914
abl1	cdk5	ENSTRUP00000061821	ENSTRUP00000009566	Tyrosine-protein kinase.	Cyclin-dependent kinase 5.	0.488
abl2	abl1	ENSTRUP00000014750	ENSTRUP00000061821	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.914
abl2	cdk5	ENSTRUP00000014750	ENSTRUP00000009566	Tyrosine-protein kinase.	Cyclin-dependent kinase 5.	0.488
cdk5	abl1	ENSTRUP00000009566	ENSTRUP00000061821	Cyclin-dependent kinase 5.	Tyrosine-protein kinase.	0.488
cdk5	abl2	ENSTRUP00000009566	ENSTRUP00000014750	Cyclin-dependent kinase 5.	Tyrosine-protein kinase.	0.488
cdk5	wdr73	ENSTRUP00000009566	ENSTRUP00000085862	Cyclin-dependent kinase 5.	Uncharacterized protein.	0.403
fgf8	smo	ENSTRUP00000058477	ENSTRUP00000082901	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.	0.404