70 items (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	map2k5	Mitogen-activated protein kinase kinase 5; Belongs to the protein kinase superfamily. (432 aa)
	dlg5	Uncharacterized protein; Belongs to the MAGUK family. (2026 aa)
	ENSTRUP00000060498	Uncharacterized protein. (154 aa)
	cd9	Tetraspanin. (246 aa)
	LOC101062944	Homeobox domain-containing protein. (190 aa)
	LOC101073618	Neurofibromin 2b (merlin). (591 aa)
	LOC101061975	Chemokine (C-C motif) ligand 25b. (100 aa)
	il10	Interleukin 10. (227 aa)
	fgl2	Fibrinogen-like 2a. (495 aa)
	LOC101069608	Bone morphogenetic protein 16. (478 aa)
	LOC101072052	Si:ch211-203k16.3. (285 aa)
	fgl1	Fibrinogen C-terminal domain-containing protein. (376 aa)
	ENSTRUP00000051512	Uncharacterized protein. (231 aa)
	bmp4	Bone morphogenetic protein 4. (459 aa)
	LOC101064398	Uncharacterized protein. (283 aa)
	LOC101064358	Chemokine (C-C motif) ligand 25a. (102 aa)
	LOC101070007	E3 ubiquitin-protein ligase. (818 aa)
	tnfrsf21	Tumor necrosis factor receptor superfamily, member 21. (673 aa)
	tgf-beta1	Transforming growth factor beta; Belongs to the TGF-beta family. (383 aa)
	CD9	Tetraspanin. (228 aa)
	mettl3	Methyltransferase like 3; Belongs to the MT-A70-like family. (582 aa)
	mad1l1	Mitotic arrest deficient 1 like 1. (719 aa)
	LOC101072649	Zinc finger protein 703. (584 aa)
	pawr	PRKC, apoptosis, WT1, regulator. (328 aa)
	LOC101064623	Zgc:77748. (303 aa)
	tbx21	T-box transcription factor 21. (616 aa)
	LOC101069682	Leucine rich repeat containing 32. (704 aa)
	ythdf2	YTH N(6)-methyladenosine RNA binding protein 2. (665 aa)
	LOC101061475	E3 ubiquitin-protein ligase. (879 aa)
	LOC101072887	Si:dkeyp-66d1.7. (292 aa)
	serpine2	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2; Belongs to the serpin family. (397 aa)
	zc3h12a	Si:dkey-206d17.12. (176 aa)
	socs1	Suppressor of cytokine signaling 1-like protein. (205 aa)
	LOC101067576	Si:ch211-157b11.8. (423 aa)
	Nexmif	Neurite extension and migration factor b. (1373 aa)
	rc3h1	Ring finger and CCCH-type domains 1b. (1123 aa)
	LOC101079684	Uncharacterized protein. (629 aa)
	LOC101062898	CCAAT enhancer binding protein beta. (376 aa)
	hlx	H2.0-like homeo box 1 (Drosophila). (381 aa)
	abl2	Tyrosine-protein kinase. (1214 aa)
	LOC101075171	Interferon regulatory factor. (308 aa)
	glmn	Glomulin, FKBP associated protein a. (599 aa)
	gtpbp4	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (635 aa)
	Rc3h2	Ring finger and CCCH-type domains 2. (1042 aa)
	LOC101071490	Arginase. (342 aa)
	LOC101070102	Myeloid associated differentiation marker. (282 aa)
	vtcn1	B7-H4. (272 aa)
	LOC101064884	IRF tryptophan pentad repeat domain-containing protein. (265 aa)
	sh2b3	SH2B adapter protein 3 isoform X1. (747 aa)
	LOC101067138	Goosecoid. (298 aa)
	abl1	Tyrosine-protein kinase. (1115 aa)
	LOC101077098	C1q and TNF related 6a. (271 aa)
	ENSTRUP00000067131	annotation not available (237 aa)
	marchf7	Membrane-associated ring finger (C3HC4) 7. (764 aa)
	akna	Microtubule organization protein AKNA isoform X1. (1267 aa)
	LOC101079512	Myelin basic protein b. (139 aa)
	il4i1	Activating transcription factor 5b. (520 aa)
	ENSTRUP00000072070	V-set immunoregulatory receptor. (227 aa)
	LOC101079175	Galectin. (369 aa)
	crtam	Uncharacterized protein. (446 aa)
	ENSTRUP00000077980	RHO family interacting cell polarization regulator 2. (1056 aa)
	tmem131l	Transmembrane protein 131-like isoform X2. (1540 aa)
	cbfb	Core-binding factor subunit beta. (188 aa)
	podxl	Podocalyxin-like. (505 aa)
	H2RPP8_TAKRU	Uncharacterized protein. (280 aa)
	c1qtnf6	C1q and TNF related 6b. (242 aa)
	H2TTQ9_TAKRU	Uncharacterized protein. (189 aa)
	nf2	Neurofibromin 2a (merlin). (589 aa)
	apoa-i	Uncharacterized protein. (263 aa)
	ripor2	RHO family interacting cell polarization regulator 2. (1114 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2TTQ9_TAKRU	tgf-beta1	ENSTRUP00000083113	ENSTRUP00000040849	Uncharacterized protein.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.648
LOC101062898	cbfb	ENSTRUP00000018437	ENSTRUP00000080310	CCAAT enhancer binding protein beta.	Core-binding factor subunit beta.	0.617
LOC101062898	il4i1	ENSTRUP00000018437	ENSTRUP00000068054	CCAAT enhancer binding protein beta.	Activating transcription factor 5b.	0.545
LOC101064884	socs1	ENSTRUP00000000543	ENSTRUP00000026649	IRF tryptophan pentad repeat domain-containing protein.	Suppressor of cytokine signaling 1-like protein.	0.458
LOC101069608	cbfb	ENSTRUP00000053630	ENSTRUP00000080310	Bone morphogenetic protein 16.	Core-binding factor subunit beta.	0.463
LOC101069682	tgf-beta1	ENSTRUP00000030497	ENSTRUP00000040849	Leucine rich repeat containing 32.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.847
LOC101071490	il10	ENSTRUP00000005026	ENSTRUP00000054385	Arginase.	Interleukin 10.	0.575
LOC101073618	nf2	ENSTRUP00000056786	ENSTRUP00000084393	Neurofibromin 2b (merlin).	Neurofibromin 2a (merlin).	0.902
LOC101075171	socs1	ENSTRUP00000010237	ENSTRUP00000026649	Interferon regulatory factor.	Suppressor of cytokine signaling 1-like protein.	0.592
LOC101079684	tgf-beta1	ENSTRUP00000018680	ENSTRUP00000040849	Uncharacterized protein.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.847
Rc3h2	rc3h1	ENSTRUP00000007866	ENSTRUP00000020897	Ring finger and CCCH-type domains 2.	Ring finger and CCCH-type domains 1b.	0.646
abl1	abl2	ENSTRUP00000061821	ENSTRUP00000014750	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.914
abl1	cbfb	ENSTRUP00000061821	ENSTRUP00000080310	Tyrosine-protein kinase.	Core-binding factor subunit beta.	0.560
abl2	abl1	ENSTRUP00000014750	ENSTRUP00000061821	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.914
abl2	cbfb	ENSTRUP00000014750	ENSTRUP00000080310	Tyrosine-protein kinase.	Core-binding factor subunit beta.	0.560
bmp4	cbfb	ENSTRUP00000049047	ENSTRUP00000080310	Bone morphogenetic protein 4.	Core-binding factor subunit beta.	0.463
cbfb	LOC101062898	ENSTRUP00000080310	ENSTRUP00000018437	Core-binding factor subunit beta.	CCAAT enhancer binding protein beta.	0.617
cbfb	LOC101069608	ENSTRUP00000080310	ENSTRUP00000053630	Core-binding factor subunit beta.	Bone morphogenetic protein 16.	0.463
cbfb	abl1	ENSTRUP00000080310	ENSTRUP00000061821	Core-binding factor subunit beta.	Tyrosine-protein kinase.	0.560
cbfb	abl2	ENSTRUP00000080310	ENSTRUP00000014750	Core-binding factor subunit beta.	Tyrosine-protein kinase.	0.560