16 items (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101076633	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (633 aa)
	LOC101069559	Abl-interactor 1b. (513 aa)
	H2T1L2_TAKRU	Glycoprotein IX (platelet). (272 aa)
	ABI1	Abl-interactor 1a. (540 aa)
	LOC101066372	MADS-box domain-containing protein. (514 aa)
	LOC101069919	GATA binding protein 1a. (421 aa)
	LOC101064005	Sp3b transcription factor. (658 aa)
	LOC101070643	E1A binding protein p300 a. (2046 aa)
	cdkn2A/B	Cyclin-dependent kinase inhibitor 2A/B (p15, inhibits CDK4). (133 aa)
	srf	Serum response factor b. (541 aa)
	SP3	Sp3a transcription factor. (669 aa)
	sh2b3	SH2B adapter protein 3 isoform X1. (747 aa)
	ENSTRUP00000064066	E1A binding protein p300 b. (2625 aa)
	LOC115248448	E1A binding protein p300 b. (2795 aa)
	uba5	Ubiquitin-like modifier activating enzyme 5. (407 aa)
	ptpn6	Protein tyrosine phosphatase non-receptor type 6. (652 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000064066	LOC101069919	ENSTRUP00000064066	ENSTRUP00000032355	E1A binding protein p300 b.	GATA binding protein 1a.	0.673
LOC101064005	LOC101069919	ENSTRUP00000038952	ENSTRUP00000032355	Sp3b transcription factor.	GATA binding protein 1a.	0.432
LOC101066372	srf	ENSTRUP00000028912	ENSTRUP00000044937	MADS-box domain-containing protein.	Serum response factor b.	0.903
LOC101069919	ENSTRUP00000064066	ENSTRUP00000032355	ENSTRUP00000064066	GATA binding protein 1a.	E1A binding protein p300 b.	0.673
LOC101069919	LOC101064005	ENSTRUP00000032355	ENSTRUP00000038952	GATA binding protein 1a.	Sp3b transcription factor.	0.432
LOC101069919	LOC101070643	ENSTRUP00000032355	ENSTRUP00000043685	GATA binding protein 1a.	E1A binding protein p300 a.	0.673
LOC101069919	LOC115248448	ENSTRUP00000032355	ENSTRUP00000069118	GATA binding protein 1a.	E1A binding protein p300 b.	0.673
LOC101069919	SP3	ENSTRUP00000032355	ENSTRUP00000045171	GATA binding protein 1a.	Sp3a transcription factor.	0.548
LOC101070643	LOC101069919	ENSTRUP00000043685	ENSTRUP00000032355	E1A binding protein p300 a.	GATA binding protein 1a.	0.673
LOC115248448	LOC101069919	ENSTRUP00000069118	ENSTRUP00000032355	E1A binding protein p300 b.	GATA binding protein 1a.	0.673
SP3	LOC101069919	ENSTRUP00000045171	ENSTRUP00000032355	Sp3a transcription factor.	GATA binding protein 1a.	0.548
srf	LOC101066372	ENSTRUP00000044937	ENSTRUP00000028912	Serum response factor b.	MADS-box domain-containing protein.	0.903