7 items (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rhou	Uncharacterized protein. (273 aa)
	LOC101068145	Uncharacterized protein. (191 aa)
	LOC101067723	Cell division cycle 42. (191 aa)
	LOC101073733	Uncharacterized protein. (202 aa)
	LOC101070751	Ras homolog family member Ub. (247 aa)
	rhov	Ras homolog family member V. (236 aa)
	H2S4X1_TAKRU	Si:dkey-280e21.3. (594 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101067723	LOC101068145	ENSTRUP00000078989	ENSTRUP00000080891	Cell division cycle 42.	Uncharacterized protein.	0.900
LOC101067723	LOC101070751	ENSTRUP00000078989	ENSTRUP00000076749	Cell division cycle 42.	Ras homolog family member Ub.	0.426
LOC101067723	rhou	ENSTRUP00000078989	ENSTRUP00000049509	Cell division cycle 42.	Uncharacterized protein.	0.425
LOC101067723	rhov	ENSTRUP00000078989	ENSTRUP00000063958	Cell division cycle 42.	Ras homolog family member V.	0.433
LOC101068145	LOC101067723	ENSTRUP00000080891	ENSTRUP00000078989	Uncharacterized protein.	Cell division cycle 42.	0.900
LOC101068145	LOC101070751	ENSTRUP00000080891	ENSTRUP00000076749	Uncharacterized protein.	Ras homolog family member Ub.	0.403
LOC101068145	rhou	ENSTRUP00000080891	ENSTRUP00000049509	Uncharacterized protein.	Uncharacterized protein.	0.401
LOC101068145	rhov	ENSTRUP00000080891	ENSTRUP00000063958	Uncharacterized protein.	Ras homolog family member V.	0.409
LOC101070751	LOC101067723	ENSTRUP00000076749	ENSTRUP00000078989	Ras homolog family member Ub.	Cell division cycle 42.	0.426
LOC101070751	LOC101068145	ENSTRUP00000076749	ENSTRUP00000080891	Ras homolog family member Ub.	Uncharacterized protein.	0.403
LOC101070751	LOC101073733	ENSTRUP00000076749	ENSTRUP00000078185	Ras homolog family member Ub.	Uncharacterized protein.	0.431
LOC101073733	LOC101070751	ENSTRUP00000078185	ENSTRUP00000076749	Uncharacterized protein.	Ras homolog family member Ub.	0.431
LOC101073733	rhou	ENSTRUP00000078185	ENSTRUP00000049509	Uncharacterized protein.	Uncharacterized protein.	0.429
LOC101073733	rhov	ENSTRUP00000078185	ENSTRUP00000063958	Uncharacterized protein.	Ras homolog family member V.	0.439
rhou	LOC101067723	ENSTRUP00000049509	ENSTRUP00000078989	Uncharacterized protein.	Cell division cycle 42.	0.425
rhou	LOC101068145	ENSTRUP00000049509	ENSTRUP00000080891	Uncharacterized protein.	Uncharacterized protein.	0.401
rhou	LOC101073733	ENSTRUP00000049509	ENSTRUP00000078185	Uncharacterized protein.	Uncharacterized protein.	0.429
rhov	LOC101067723	ENSTRUP00000063958	ENSTRUP00000078989	Ras homolog family member V.	Cell division cycle 42.	0.433
rhov	LOC101068145	ENSTRUP00000063958	ENSTRUP00000080891	Ras homolog family member V.	Uncharacterized protein.	0.409
rhov	LOC101073733	ENSTRUP00000063958	ENSTRUP00000078185	Ras homolog family member V.	Uncharacterized protein.	0.439