29 items (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101061335	Bromodomain containing 4. (1553 aa)
	LOC101068554	SPT16 homolog, facilitates chromatin remodeling subunit. (1031 aa)
	supt5h	Transcription elongation factor SPT5. (1082 aa)
	LOC101068432	Occludin; May play a role in the formation and regulation of the tight junction (TJ) paracellular permeability barrier. Belongs to the ELL/occludin family. (546 aa)
	LOC101061452	Occludin; May play a role in the formation and regulation of the tight junction (TJ) paracellular permeability barrier. Belongs to the ELL/occludin family. (514 aa)
	pwwp2b	PWWP domain containing 2B. (616 aa)
	cdk13	Cyclin-dependent kinase 13. (860 aa)
	ell2	Elongation factor, RNA polymerase II, 2. (682 aa)
	LOC101062747	Uncharacterized protein. (162 aa)
	LOC101078784	Uncharacterized protein. (1343 aa)
	leo1	LEO1 homolog, Paf1/RNA polymerase II complex component. (700 aa)
	ell	Elongation factor RNA polymerase II. (625 aa)
	LOC101079131	Chromobox homolog 7a. (373 aa)
	supt6h	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1744 aa)
	Ccnt2	Cyclin T2; Belongs to the cyclin family. (731 aa)
	cdc73	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae). (567 aa)
	pwwp2a	PWWP domain-containing protein. (948 aa)
	LOC101073994	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (377 aa)
	ENSTRUP00000059534	Chromobox homolog 7a. (373 aa)
	LOC101072365	Uncharacterized protein. (566 aa)
	cdk12	Cyclin-dependent kinase 12 isoform X1. (1349 aa)
	ENSTRUP00000070492	annotation not available (141 aa)
	ENSTRUP00000071314	annotation not available (188 aa)
	LOC101079666	Cyclin T2b; Belongs to the cyclin family. (613 aa)
	cbx8	Chromo domain-containing protein. (151 aa)
	LOC101065968	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (526 aa)
	LOC101070872	Chromobox protein homolog 7. (248 aa)
	LOC101080126	Si:ch211-13k12.2. (598 aa)
	eapp	E2f-associated phosphoprotein. (299 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ccnt2	ENSTRUP00000070492	ENSTRUP00000053959	ENSTRUP00000070492	Cyclin T2; Belongs to the cyclin family.	annotation not available	0.637
Ccnt2	ENSTRUP00000071314	ENSTRUP00000053959	ENSTRUP00000071314	Cyclin T2; Belongs to the cyclin family.	annotation not available	0.717
Ccnt2	LOC101062747	ENSTRUP00000053959	ENSTRUP00000039722	Cyclin T2; Belongs to the cyclin family.	Uncharacterized protein.	0.637
Ccnt2	LOC101065968	ENSTRUP00000053959	ENSTRUP00000079295	Cyclin T2; Belongs to the cyclin family.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.571
Ccnt2	LOC101068554	ENSTRUP00000053959	ENSTRUP00000004506	Cyclin T2; Belongs to the cyclin family.	SPT16 homolog, facilitates chromatin remodeling subunit.	0.604
Ccnt2	LOC101072365	ENSTRUP00000053959	ENSTRUP00000061063	Cyclin T2; Belongs to the cyclin family.	Uncharacterized protein.	0.637
Ccnt2	LOC101073994	ENSTRUP00000053959	ENSTRUP00000054828	Cyclin T2; Belongs to the cyclin family.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.571
Ccnt2	LOC101080126	ENSTRUP00000053959	ENSTRUP00000086674	Cyclin T2; Belongs to the cyclin family.	Si:ch211-13k12.2.	0.637
Ccnt2	cdc73	ENSTRUP00000053959	ENSTRUP00000054471	Cyclin T2; Belongs to the cyclin family.	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	0.413
Ccnt2	cdk12	ENSTRUP00000053959	ENSTRUP00000069106	Cyclin T2; Belongs to the cyclin family.	Cyclin-dependent kinase 12 isoform X1.	0.845
Ccnt2	cdk13	ENSTRUP00000053959	ENSTRUP00000033911	Cyclin T2; Belongs to the cyclin family.	Cyclin-dependent kinase 13.	0.845
Ccnt2	ell	ENSTRUP00000053959	ENSTRUP00000045699	Cyclin T2; Belongs to the cyclin family.	Elongation factor RNA polymerase II.	0.637
Ccnt2	ell2	ENSTRUP00000053959	ENSTRUP00000038344	Cyclin T2; Belongs to the cyclin family.	Elongation factor, RNA polymerase II, 2.	0.637
Ccnt2	leo1	ENSTRUP00000053959	ENSTRUP00000043557	Cyclin T2; Belongs to the cyclin family.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.519
Ccnt2	supt5h	ENSTRUP00000053959	ENSTRUP00000005469	Cyclin T2; Belongs to the cyclin family.	Transcription elongation factor SPT5.	0.717
ENSTRUP00000070492	Ccnt2	ENSTRUP00000070492	ENSTRUP00000053959	annotation not available	Cyclin T2; Belongs to the cyclin family.	0.637
ENSTRUP00000070492	ENSTRUP00000071314	ENSTRUP00000070492	ENSTRUP00000071314	annotation not available	annotation not available	0.598
ENSTRUP00000070492	LOC101065968	ENSTRUP00000070492	ENSTRUP00000079295	annotation not available	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.409
ENSTRUP00000070492	LOC101073994	ENSTRUP00000070492	ENSTRUP00000054828	annotation not available	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.409
ENSTRUP00000070492	LOC101079666	ENSTRUP00000070492	ENSTRUP00000071606	annotation not available	Cyclin T2b; Belongs to the cyclin family.	0.637