14 items (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nck2	Cytoplasmic protein. (396 aa)
	paqr3	Progestin and adipoQ receptor family member IIIa. (341 aa)
	LOC101077228	Inositol polyphosphate-5-phosphatase Kb. (476 aa)
	LOC101067511	Zgc:153993. (202 aa)
	LOC101066540	Progestin and adipoQ receptor family member IIIb. (319 aa)
	LOC105416356	Dickkopf WNT signaling pathway inhibitor 1a. (348 aa)
	LOC101070552	Inositol polyphosphate-5-phosphatase Jb. (699 aa)
	LOC101066042	Inositol polyphosphate-5-phosphatase Ka. (527 aa)
	BDKRB2	Bradykinin receptor B2; Belongs to the G-protein coupled receptor 1 family. (345 aa)
	nck1	Cytoplasmic protein. (399 aa)
	bax	BCL2 associated X, apoptosis regulator a. (193 aa)
	inpp5j	Inositol polyphosphate-5-phosphatase Ja. (720 aa)
	pwp1	PWP1 homolog, endonuclein. (501 aa)
	epm2a	EPM2A glucan phosphatase, laforin. (318 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101066042	LOC101077228	ENSTRUP00000032036	ENSTRUP00000004169	Inositol polyphosphate-5-phosphatase Ka.	Inositol polyphosphate-5-phosphatase Kb.	0.902
LOC101066042	inpp5j	ENSTRUP00000032036	ENSTRUP00000064311	Inositol polyphosphate-5-phosphatase Ka.	Inositol polyphosphate-5-phosphatase Ja.	0.900
LOC101067511	bax	ENSTRUP00000006891	ENSTRUP00000052616	Zgc:153993.	BCL2 associated X, apoptosis regulator a.	0.986
LOC101077228	LOC101066042	ENSTRUP00000004169	ENSTRUP00000032036	Inositol polyphosphate-5-phosphatase Kb.	Inositol polyphosphate-5-phosphatase Ka.	0.902
LOC101077228	inpp5j	ENSTRUP00000004169	ENSTRUP00000064311	Inositol polyphosphate-5-phosphatase Kb.	Inositol polyphosphate-5-phosphatase Ja.	0.900
bax	LOC101067511	ENSTRUP00000052616	ENSTRUP00000006891	BCL2 associated X, apoptosis regulator a.	Zgc:153993.	0.986
inpp5j	LOC101066042	ENSTRUP00000064311	ENSTRUP00000032036	Inositol polyphosphate-5-phosphatase Ja.	Inositol polyphosphate-5-phosphatase Ka.	0.900
inpp5j	LOC101077228	ENSTRUP00000064311	ENSTRUP00000004169	Inositol polyphosphate-5-phosphatase Ja.	Inositol polyphosphate-5-phosphatase Kb.	0.900
nck1	nck2	ENSTRUP00000045455	ENSTRUP00000034543	Cytoplasmic protein.	Cytoplasmic protein.	0.902
nck2	nck1	ENSTRUP00000034543	ENSTRUP00000045455	Cytoplasmic protein.	Cytoplasmic protein.	0.902