6 items (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	vcp	Valosin containing protein; Belongs to the AAA ATPase family. (819 aa)
	ufd1	Ubiquitin recognition factor in ER associated degradation 1. (400 aa)
	UBXN7	UBX domain protein 7. (521 aa)
	faf1	Fas (TNFRSF6) associated factor 1. (669 aa)
	ubxn7	UBX domain protein 7. (558 aa)
	faf2	Fas associated factor family member 2. (445 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UBXN7	faf1	ENSTRUP00000065925	ENSTRUP00000004343	UBX domain protein 7.	Fas (TNFRSF6) associated factor 1.	0.928
UBXN7	faf2	ENSTRUP00000065925	ENSTRUP00000028320	UBX domain protein 7.	Fas associated factor family member 2.	0.928
UBXN7	ufd1	ENSTRUP00000065925	ENSTRUP00000057122	UBX domain protein 7.	Ubiquitin recognition factor in ER associated degradation 1.	0.999
UBXN7	vcp	ENSTRUP00000065925	ENSTRUP00000045516	UBX domain protein 7.	Valosin containing protein; Belongs to the AAA ATPase family.	0.999
faf1	UBXN7	ENSTRUP00000004343	ENSTRUP00000065925	Fas (TNFRSF6) associated factor 1.	UBX domain protein 7.	0.928
faf1	ubxn7	ENSTRUP00000004343	ENSTRUP00000012597	Fas (TNFRSF6) associated factor 1.	UBX domain protein 7.	0.928
faf1	ufd1	ENSTRUP00000004343	ENSTRUP00000057122	Fas (TNFRSF6) associated factor 1.	Ubiquitin recognition factor in ER associated degradation 1.	0.968
faf1	vcp	ENSTRUP00000004343	ENSTRUP00000045516	Fas (TNFRSF6) associated factor 1.	Valosin containing protein; Belongs to the AAA ATPase family.	0.991
faf2	UBXN7	ENSTRUP00000028320	ENSTRUP00000065925	Fas associated factor family member 2.	UBX domain protein 7.	0.928
faf2	ubxn7	ENSTRUP00000028320	ENSTRUP00000012597	Fas associated factor family member 2.	UBX domain protein 7.	0.928
faf2	ufd1	ENSTRUP00000028320	ENSTRUP00000057122	Fas associated factor family member 2.	Ubiquitin recognition factor in ER associated degradation 1.	0.964
faf2	vcp	ENSTRUP00000028320	ENSTRUP00000045516	Fas associated factor family member 2.	Valosin containing protein; Belongs to the AAA ATPase family.	0.981
ubxn7	faf1	ENSTRUP00000012597	ENSTRUP00000004343	UBX domain protein 7.	Fas (TNFRSF6) associated factor 1.	0.928
ubxn7	faf2	ENSTRUP00000012597	ENSTRUP00000028320	UBX domain protein 7.	Fas associated factor family member 2.	0.928
ubxn7	ufd1	ENSTRUP00000012597	ENSTRUP00000057122	UBX domain protein 7.	Ubiquitin recognition factor in ER associated degradation 1.	0.999
ubxn7	vcp	ENSTRUP00000012597	ENSTRUP00000045516	UBX domain protein 7.	Valosin containing protein; Belongs to the AAA ATPase family.	0.999
ufd1	UBXN7	ENSTRUP00000057122	ENSTRUP00000065925	Ubiquitin recognition factor in ER associated degradation 1.	UBX domain protein 7.	0.999
ufd1	faf1	ENSTRUP00000057122	ENSTRUP00000004343	Ubiquitin recognition factor in ER associated degradation 1.	Fas (TNFRSF6) associated factor 1.	0.968
ufd1	faf2	ENSTRUP00000057122	ENSTRUP00000028320	Ubiquitin recognition factor in ER associated degradation 1.	Fas associated factor family member 2.	0.964
ufd1	ubxn7	ENSTRUP00000057122	ENSTRUP00000012597	Ubiquitin recognition factor in ER associated degradation 1.	UBX domain protein 7.	0.999