(11 nodes) Establishment of epithelial cell apical/basal polarity network (Takifugu rubripes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ttc8	Tetratricopeptide repeat domain 8. (501 aa)
	LOC101068580	SH3-domain binding protein 1. (699 aa)
	PTK7	Protein tyrosine kinase 7 (inactive); Belongs to the protein kinase superfamily. Tyr protein kinase family. (1084 aa)
	CDH2	Cadherin 2. (925 aa)
	LOC101065779	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (910 aa)
	CDH2-2	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins. (937 aa)
	LOC101075743	Myosin IXAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2367 aa)
	LOC101073733	Uncharacterized protein. (202 aa)
	LOC101067723	Cell division cycle 42. (191 aa)
	myo9a	Myosin IXAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2684 aa)
	LOC101068145	Uncharacterized protein. (191 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDH2	LOC101067723	ENSTRUP00000058895	ENSTRUP00000078989	Cadherin 2.	Cell division cycle 42.	0.457
CDH2	LOC101073733	ENSTRUP00000058895	ENSTRUP00000078185	Cadherin 2.	Uncharacterized protein.	0.457
CDH2-2	LOC101065779	ENSTRUP00000067097	ENSTRUP00000066251	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.901
CDH2-2	LOC101067723	ENSTRUP00000067097	ENSTRUP00000078989	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins.	Cell division cycle 42.	0.457
CDH2-2	LOC101073733	ENSTRUP00000067097	ENSTRUP00000078185	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein.	0.457
LOC101065779	CDH2-2	ENSTRUP00000066251	ENSTRUP00000067097	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins.	0.901
LOC101065779	LOC101067723	ENSTRUP00000066251	ENSTRUP00000078989	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Cell division cycle 42.	0.457
LOC101065779	LOC101073733	ENSTRUP00000066251	ENSTRUP00000078185	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein.	0.457
LOC101067723	CDH2	ENSTRUP00000078989	ENSTRUP00000058895	Cell division cycle 42.	Cadherin 2.	0.457
LOC101067723	CDH2-2	ENSTRUP00000078989	ENSTRUP00000067097	Cell division cycle 42.	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins.	0.457
LOC101067723	LOC101065779	ENSTRUP00000078989	ENSTRUP00000066251	Cell division cycle 42.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.457
LOC101067723	LOC101068145	ENSTRUP00000078989	ENSTRUP00000080891	Cell division cycle 42.	Uncharacterized protein.	0.900
LOC101067723	LOC101075743	ENSTRUP00000078989	ENSTRUP00000069911	Cell division cycle 42.	Myosin IXAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.746
LOC101067723	myo9a	ENSTRUP00000078989	ENSTRUP00000079639	Cell division cycle 42.	Myosin IXAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.746
LOC101068145	LOC101067723	ENSTRUP00000080891	ENSTRUP00000078989	Uncharacterized protein.	Cell division cycle 42.	0.900
LOC101068145	LOC101075743	ENSTRUP00000080891	ENSTRUP00000069911	Uncharacterized protein.	Myosin IXAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.746
LOC101068145	myo9a	ENSTRUP00000080891	ENSTRUP00000079639	Uncharacterized protein.	Myosin IXAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.746
LOC101073733	CDH2	ENSTRUP00000078185	ENSTRUP00000058895	Uncharacterized protein.	Cadherin 2.	0.457
LOC101073733	CDH2-2	ENSTRUP00000078185	ENSTRUP00000067097	Uncharacterized protein.	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins.	0.457
LOC101073733	LOC101065779	ENSTRUP00000078185	ENSTRUP00000066251	Uncharacterized protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.457