9 items (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	appl1	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1. (693 aa)
	appl2	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2. (668 aa)
	ppt1	Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile). (328 aa)
	LOC101073733	Uncharacterized protein. (202 aa)
	LOC101075318	Ankyrin repeat and FYVE domain containing 1. (1190 aa)
	ENSTRUP00000078958	annotation not available (56 aa)
	LOC101067723	Cell division cycle 42. (191 aa)
	LOC101068145	Uncharacterized protein. (191 aa)
	cln3	Battenin. (465 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000078958	LOC101067723	ENSTRUP00000078958	ENSTRUP00000078989	annotation not available	Cell division cycle 42.	0.469
ENSTRUP00000078958	LOC101068145	ENSTRUP00000078958	ENSTRUP00000080891	annotation not available	Uncharacterized protein.	0.469
ENSTRUP00000078958	LOC101073733	ENSTRUP00000078958	ENSTRUP00000078185	annotation not available	Uncharacterized protein.	0.469
ENSTRUP00000078958	appl1	ENSTRUP00000078958	ENSTRUP00000085514	annotation not available	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	0.599
ENSTRUP00000078958	appl2	ENSTRUP00000078958	ENSTRUP00000050989	annotation not available	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	0.599
LOC101067723	ENSTRUP00000078958	ENSTRUP00000078989	ENSTRUP00000078958	Cell division cycle 42.	annotation not available	0.469
LOC101067723	LOC101068145	ENSTRUP00000078989	ENSTRUP00000080891	Cell division cycle 42.	Uncharacterized protein.	0.900
LOC101067723	LOC101075318	ENSTRUP00000078989	ENSTRUP00000078769	Cell division cycle 42.	Ankyrin repeat and FYVE domain containing 1.	0.469
LOC101068145	ENSTRUP00000078958	ENSTRUP00000080891	ENSTRUP00000078958	Uncharacterized protein.	annotation not available	0.469
LOC101068145	LOC101067723	ENSTRUP00000080891	ENSTRUP00000078989	Uncharacterized protein.	Cell division cycle 42.	0.900
LOC101068145	LOC101075318	ENSTRUP00000080891	ENSTRUP00000078769	Uncharacterized protein.	Ankyrin repeat and FYVE domain containing 1.	0.469
LOC101073733	ENSTRUP00000078958	ENSTRUP00000078185	ENSTRUP00000078958	Uncharacterized protein.	annotation not available	0.469
LOC101073733	LOC101075318	ENSTRUP00000078185	ENSTRUP00000078769	Uncharacterized protein.	Ankyrin repeat and FYVE domain containing 1.	0.469
LOC101075318	LOC101067723	ENSTRUP00000078769	ENSTRUP00000078989	Ankyrin repeat and FYVE domain containing 1.	Cell division cycle 42.	0.469
LOC101075318	LOC101068145	ENSTRUP00000078769	ENSTRUP00000080891	Ankyrin repeat and FYVE domain containing 1.	Uncharacterized protein.	0.469
LOC101075318	LOC101073733	ENSTRUP00000078769	ENSTRUP00000078185	Ankyrin repeat and FYVE domain containing 1.	Uncharacterized protein.	0.469
LOC101075318	appl1	ENSTRUP00000078769	ENSTRUP00000085514	Ankyrin repeat and FYVE domain containing 1.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	0.599
LOC101075318	appl2	ENSTRUP00000078769	ENSTRUP00000050989	Ankyrin repeat and FYVE domain containing 1.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	0.599
appl1	ENSTRUP00000078958	ENSTRUP00000085514	ENSTRUP00000078958	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	annotation not available	0.599
appl1	LOC101075318	ENSTRUP00000085514	ENSTRUP00000078769	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	Ankyrin repeat and FYVE domain containing 1.	0.599