20 items (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	abl2	Tyrosine-protein kinase. (1214 aa)
	shank1	SH3 and multiple ankyrin repeat domains 1. (1611 aa)
	cln8	CLN8 transmembrane ER and ERGIC protein. (288 aa)
	LOC101069067	Biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino. (240 aa)
	LOC101073659	Uncharacterized protein. (1693 aa)
	shank3	SH3 and multiple ankyrin repeat domains protein 3 isoform X1. (1985 aa)
	abl1	Tyrosine-protein kinase. (1115 aa)
	ENSTRUP00000062106	SH3 and multiple ankyrin repeat domains protein 3-like isoform X1. (1683 aa)
	igdcc3	Immunoglobulin superfamily, DCC subclass, member 3. (773 aa)
	shank2	SH3 and multiple ankyrin repeat domains 2a. (1791 aa)
	hexb	Beta-hexosaminidase. (565 aa)
	gm2a	ML domain-containing protein. (355 aa)
	pou4f1	POU domain protein. (367 aa)
	fer1l6	Fer-1-like protein 6 isoform X1. (1880 aa)
	ENSTRUP00000069500	Immunoglobulin superfamily DCC subclass member 3-like. (697 aa)
	LOC101078836	Solute carrier family 17 member 8. (591 aa)
	LOC101075201	Si:ch211-57n23.4. (708 aa)
	pou4f2	POU domain protein. (382 aa)
	LOC101070078	Otoferlin a. (1808 aa)
	LOC101065208	Usher syndrome 1C. (557 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101070078	LOC101078836	ENSTRUP00000009034	ENSTRUP00000066731	Otoferlin a.	Solute carrier family 17 member 8.	0.433
LOC101078836	LOC101070078	ENSTRUP00000066731	ENSTRUP00000009034	Solute carrier family 17 member 8.	Otoferlin a.	0.433
LOC101078836	fer1l6	ENSTRUP00000066731	ENSTRUP00000078155	Solute carrier family 17 member 8.	Fer-1-like protein 6 isoform X1.	0.433
abl1	abl2	ENSTRUP00000061821	ENSTRUP00000014750	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.914
abl2	abl1	ENSTRUP00000014750	ENSTRUP00000061821	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.914
cln8	gm2a	ENSTRUP00000027787	ENSTRUP00000072903	CLN8 transmembrane ER and ERGIC protein.	ML domain-containing protein.	0.435
fer1l6	LOC101078836	ENSTRUP00000078155	ENSTRUP00000066731	Fer-1-like protein 6 isoform X1.	Solute carrier family 17 member 8.	0.433
gm2a	cln8	ENSTRUP00000072903	ENSTRUP00000027787	ML domain-containing protein.	CLN8 transmembrane ER and ERGIC protein.	0.435
gm2a	hexb	ENSTRUP00000072903	ENSTRUP00000077615	ML domain-containing protein.	Beta-hexosaminidase.	0.765
hexb	gm2a	ENSTRUP00000077615	ENSTRUP00000072903	Beta-hexosaminidase.	ML domain-containing protein.	0.765