37 items (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC105416886	Putative pyruvate dehydrogenase phosphatase isoenzyme 2. (550 aa)
	LOC101066870	Uncharacterized protein. (82 aa)
	rfk	Riboflavin kinase. (173 aa)
	fdx2	Ferredoxin 2. (180 aa)
	LOC101075416	GTP cyclohydrolase 2. (230 aa)
	ccs	Copper chaperone for superoxide dismutase. (270 aa)
	abl2	Tyrosine-protein kinase. (1214 aa)
	LOC101069927	Dihydrofolate reductase. (187 aa)
	LOC101077941	NADPH--cytochrome P450 reductase; This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5; In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. (675 aa)
	apopt1	Cytochrome c oxidase assembly factor 8. (144 aa)
	LOC101066119	NAD-dependent protein deacetylase; NAD-dependent protein deacetylase. (431 aa)
	pdp1	Pyruvate dehyrogenase phosphatase catalytic subunit 1. (521 aa)
	apoe1	Uncharacterized protein. (247 aa)
	sirt3	Sirtuin 3. (340 aa)
	gdnf	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake. (253 aa)
	npr3	Natriuretic peptide receptor 3. (498 aa)
	LOC101067126	NDUFA4 mitochondrial complex associated like 2b. (82 aa)
	LOC101064643	GTP cyclohydrolase 1. (257 aa)
	il1b	Interleukin-1; Belongs to the IL-1 family. (256 aa)
	ENSTRUP00000048657	NADH:ubiquinone oxidoreductase subunit A4. (153 aa)
	ENSTRUP00000049334	Uncharacterized protein. (114 aa)
	ENSTRUP00000049598	Cytochrome c oxidase copper chaperone COX17. (103 aa)
	edn1	Endothelin 1. (137 aa)
	LOC115249042	Uncharacterized protein. (157 aa)
	LOC101079526	Endothelin 2. (156 aa)
	fdx1	2Fe-2S ferredoxin-type domain-containing protein. (164 aa)
	fxn	Frataxin. (211 aa)
	LOC101068299	Protein S100; Belongs to the S-100 family. (101 aa)
	abl1	Tyrosine-protein kinase. (1115 aa)
	nod1	Nucleotide-binding oligomerization domain containing 1. (946 aa)
	pdpr	Pyruvate dehydrogenase phosphatase regulatory subunit. (892 aa)
	nod2	CARD15. (998 aa)
	scarb1	Scavenger receptor class B, member 1; Belongs to the CD36 family. (512 aa)
	ENSTRUP00000072341	Dihydrofolate reductase. (187 aa)
	sdhaf4	Succinate dehydrogenase complex assembly factor 4. (101 aa)
	apoe2	Apolipoprotein E2. (276 aa)
	LOC101079925	GTP cyclohydrolase 1-like. (220 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000049598	ccs	ENSTRUP00000049598	ENSTRUP00000013501	Cytochrome c oxidase copper chaperone COX17.	Copper chaperone for superoxide dismutase.	0.854
ENSTRUP00000049598	sdhaf4	ENSTRUP00000049598	ENSTRUP00000074167	Cytochrome c oxidase copper chaperone COX17.	Succinate dehydrogenase complex assembly factor 4.	0.499
ENSTRUP00000072341	pdpr	ENSTRUP00000072341	ENSTRUP00000066460	Dihydrofolate reductase.	Pyruvate dehydrogenase phosphatase regulatory subunit.	0.560
LOC101064643	LOC101075416	ENSTRUP00000039273	ENSTRUP00000010789	GTP cyclohydrolase 1.	GTP cyclohydrolase 2.	0.901
LOC101064643	LOC101079925	ENSTRUP00000039273	ENSTRUP00000077785	GTP cyclohydrolase 1.	GTP cyclohydrolase 1-like.	0.902
LOC101064643	rfk	ENSTRUP00000039273	ENSTRUP00000009454	GTP cyclohydrolase 1.	Riboflavin kinase.	0.476
LOC101066870	LOC101067126	ENSTRUP00000003765	ENSTRUP00000037698	Uncharacterized protein.	NDUFA4 mitochondrial complex associated like 2b.	0.902
LOC101067126	LOC101066870	ENSTRUP00000037698	ENSTRUP00000003765	NDUFA4 mitochondrial complex associated like 2b.	Uncharacterized protein.	0.902
LOC101069927	pdpr	ENSTRUP00000015348	ENSTRUP00000066460	Dihydrofolate reductase.	Pyruvate dehydrogenase phosphatase regulatory subunit.	0.560
LOC101075416	LOC101064643	ENSTRUP00000010789	ENSTRUP00000039273	GTP cyclohydrolase 2.	GTP cyclohydrolase 1.	0.901
LOC101075416	LOC101079925	ENSTRUP00000010789	ENSTRUP00000077785	GTP cyclohydrolase 2.	GTP cyclohydrolase 1-like.	0.901
LOC101075416	rfk	ENSTRUP00000010789	ENSTRUP00000009454	GTP cyclohydrolase 2.	Riboflavin kinase.	0.476
LOC101077941	fdx1	ENSTRUP00000018393	ENSTRUP00000056828	NADPH--cytochrome P450 reductase; This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5; In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.	2Fe-2S ferredoxin-type domain-containing protein.	0.666
LOC101077941	fdx2	ENSTRUP00000018393	ENSTRUP00000010626	NADPH--cytochrome P450 reductase; This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5; In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.	Ferredoxin 2.	0.666
LOC101079526	LOC115249042	ENSTRUP00000056551	ENSTRUP00000053814	Endothelin 2.	Uncharacterized protein.	0.600
LOC101079526	edn1	ENSTRUP00000056551	ENSTRUP00000052344	Endothelin 2.	Endothelin 1.	0.602
LOC101079925	LOC101064643	ENSTRUP00000077785	ENSTRUP00000039273	GTP cyclohydrolase 1-like.	GTP cyclohydrolase 1.	0.902
LOC101079925	LOC101075416	ENSTRUP00000077785	ENSTRUP00000010789	GTP cyclohydrolase 1-like.	GTP cyclohydrolase 2.	0.901
LOC101079925	rfk	ENSTRUP00000077785	ENSTRUP00000009454	GTP cyclohydrolase 1-like.	Riboflavin kinase.	0.476
LOC105416886	pdpr	ENSTRUP00000078066	ENSTRUP00000066460	Putative pyruvate dehydrogenase phosphatase isoenzyme 2.	Pyruvate dehydrogenase phosphatase regulatory subunit.	0.707