21 items (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	agrn	Agrin. (2110 aa)
	ripor2	RHO family interacting cell polarization regulator 2. (1114 aa)
	fnbp1l	Formin binding protein 1-like. (613 aa)
	H2T6J9_TAKRU	Uncharacterized protein. (255 aa)
	LOC101065762	Glycoprotein M6Aa. (278 aa)
	LOC101066372	MADS-box domain-containing protein. (514 aa)
	srf	Serum response factor b. (541 aa)
	mien1	Selenoprotein W, 2b. (81 aa)
	LOC101076362	Dihydropyrimidinase like 3. (694 aa)
	tenm1	Teneurin transmembrane protein 1. (2756 aa)
	GPM6A	Glycoprotein M6Ab. (115 aa)
	Myo3a	Myosin-IIIa isoform X1. (1710 aa)
	nrp1	Neuropilin; Belongs to the neuropilin family. (955 aa)
	myo3b	Myosin IIIB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1296 aa)
	LOC101064834	Paralemmin 1b. (229 aa)
	fmr1	Fragile X mental retardation 1. (604 aa)
	ENSTRUP00000077980	RHO family interacting cell polarization regulator 2. (1056 aa)
	LOC101073733	Uncharacterized protein. (202 aa)
	LOC101067723	Cell division cycle 42. (191 aa)
	ENSTRUP00000080572	Neuronal membrane glycoprotein M6-a-like. (78 aa)
	LOC101068145	Uncharacterized protein. (191 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000080572	GPM6A	ENSTRUP00000080572	ENSTRUP00000060228	Neuronal membrane glycoprotein M6-a-like.	Glycoprotein M6Ab.	0.862
GPM6A	ENSTRUP00000080572	ENSTRUP00000060228	ENSTRUP00000080572	Glycoprotein M6Ab.	Neuronal membrane glycoprotein M6-a-like.	0.862
LOC101066372	srf	ENSTRUP00000028912	ENSTRUP00000044937	MADS-box domain-containing protein.	Serum response factor b.	0.903
LOC101067723	LOC101068145	ENSTRUP00000078989	ENSTRUP00000080891	Cell division cycle 42.	Uncharacterized protein.	0.900
LOC101067723	fnbp1l	ENSTRUP00000078989	ENSTRUP00000014721	Cell division cycle 42.	Formin binding protein 1-like.	0.764
LOC101068145	LOC101067723	ENSTRUP00000080891	ENSTRUP00000078989	Uncharacterized protein.	Cell division cycle 42.	0.900
LOC101068145	fnbp1l	ENSTRUP00000080891	ENSTRUP00000014721	Uncharacterized protein.	Formin binding protein 1-like.	0.610
LOC101073733	fnbp1l	ENSTRUP00000078185	ENSTRUP00000014721	Uncharacterized protein.	Formin binding protein 1-like.	0.764
LOC101076362	nrp1	ENSTRUP00000059330	ENSTRUP00000068935	Dihydropyrimidinase like 3.	Neuropilin; Belongs to the neuropilin family.	0.415
fnbp1l	LOC101067723	ENSTRUP00000014721	ENSTRUP00000078989	Formin binding protein 1-like.	Cell division cycle 42.	0.764
fnbp1l	LOC101068145	ENSTRUP00000014721	ENSTRUP00000080891	Formin binding protein 1-like.	Uncharacterized protein.	0.610
fnbp1l	LOC101073733	ENSTRUP00000014721	ENSTRUP00000078185	Formin binding protein 1-like.	Uncharacterized protein.	0.764
nrp1	LOC101076362	ENSTRUP00000068935	ENSTRUP00000059330	Neuropilin; Belongs to the neuropilin family.	Dihydropyrimidinase like 3.	0.415
srf	LOC101066372	ENSTRUP00000044937	ENSTRUP00000028912	Serum response factor b.	MADS-box domain-containing protein.	0.903