11 items (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	emc8	ER membrane protein complex subunit 8. (204 aa)
	emc10	ER membrane protein complex subunit 10. (256 aa)
	H2RPX4_TAKRU	ER membrane protein complex subunit 6. (110 aa)
	emc4	ER membrane protein complex subunit 4; Belongs to the EMC4 family. (196 aa)
	LOC101078521	ER membrane protein complex subunit 3; Belongs to the EMC3 family. (261 aa)
	emc9	ER membrane protein complex subunit 9. (205 aa)
	mmgt1	Membrane magnesium transporter 1. (130 aa)
	ENSTRUP00000074317	ER membrane protein complex subunit 10. (226 aa)
	emc3	ER membrane protein complex subunit 3; Belongs to the EMC3 family. (261 aa)
	emc7	ER membrane protein complex subunit 7. (276 aa)
	emc1	ER membrane protein complex subunit 1. (994 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000074317	H2RPX4_TAKRU	ENSTRUP00000074317	ENSTRUP00000002188	ER membrane protein complex subunit 10.	ER membrane protein complex subunit 6.	0.862
ENSTRUP00000074317	LOC101078521	ENSTRUP00000074317	ENSTRUP00000015097	ER membrane protein complex subunit 10.	ER membrane protein complex subunit 3; Belongs to the EMC3 family.	0.790
ENSTRUP00000074317	emc1	ENSTRUP00000074317	ENSTRUP00000080242	ER membrane protein complex subunit 10.	ER membrane protein complex subunit 1.	0.922
ENSTRUP00000074317	emc3	ENSTRUP00000074317	ENSTRUP00000074407	ER membrane protein complex subunit 10.	ER membrane protein complex subunit 3; Belongs to the EMC3 family.	0.790
ENSTRUP00000074317	emc4	ENSTRUP00000074317	ENSTRUP00000012558	ER membrane protein complex subunit 10.	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	0.889
ENSTRUP00000074317	emc7	ENSTRUP00000074317	ENSTRUP00000077463	ER membrane protein complex subunit 10.	ER membrane protein complex subunit 7.	0.925
ENSTRUP00000074317	emc8	ENSTRUP00000074317	ENSTRUP00000083199	ER membrane protein complex subunit 10.	ER membrane protein complex subunit 8.	0.870
ENSTRUP00000074317	emc9	ENSTRUP00000074317	ENSTRUP00000045432	ER membrane protein complex subunit 10.	ER membrane protein complex subunit 9.	0.673
ENSTRUP00000074317	mmgt1	ENSTRUP00000074317	ENSTRUP00000057488	ER membrane protein complex subunit 10.	Membrane magnesium transporter 1.	0.884
H2RPX4_TAKRU	ENSTRUP00000074317	ENSTRUP00000002188	ENSTRUP00000074317	ER membrane protein complex subunit 6.	ER membrane protein complex subunit 10.	0.862
H2RPX4_TAKRU	LOC101078521	ENSTRUP00000002188	ENSTRUP00000015097	ER membrane protein complex subunit 6.	ER membrane protein complex subunit 3; Belongs to the EMC3 family.	0.934
H2RPX4_TAKRU	emc1	ENSTRUP00000002188	ENSTRUP00000080242	ER membrane protein complex subunit 6.	ER membrane protein complex subunit 1.	0.979
H2RPX4_TAKRU	emc10	ENSTRUP00000002188	ENSTRUP00000001314	ER membrane protein complex subunit 6.	ER membrane protein complex subunit 10.	0.862
H2RPX4_TAKRU	emc3	ENSTRUP00000002188	ENSTRUP00000074407	ER membrane protein complex subunit 6.	ER membrane protein complex subunit 3; Belongs to the EMC3 family.	0.974
H2RPX4_TAKRU	emc4	ENSTRUP00000002188	ENSTRUP00000012558	ER membrane protein complex subunit 6.	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	0.980
H2RPX4_TAKRU	emc7	ENSTRUP00000002188	ENSTRUP00000077463	ER membrane protein complex subunit 6.	ER membrane protein complex subunit 7.	0.947
H2RPX4_TAKRU	emc8	ENSTRUP00000002188	ENSTRUP00000083199	ER membrane protein complex subunit 6.	ER membrane protein complex subunit 8.	0.964
H2RPX4_TAKRU	emc9	ENSTRUP00000002188	ENSTRUP00000045432	ER membrane protein complex subunit 6.	ER membrane protein complex subunit 9.	0.848
H2RPX4_TAKRU	mmgt1	ENSTRUP00000002188	ENSTRUP00000057488	ER membrane protein complex subunit 6.	Membrane magnesium transporter 1.	0.981
LOC101078521	ENSTRUP00000074317	ENSTRUP00000015097	ENSTRUP00000074317	ER membrane protein complex subunit 3; Belongs to the EMC3 family.	ER membrane protein complex subunit 10.	0.790