(43 nodes) Regulation of miRNA metabolic process network (Takifugu rubripes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSTRUP00000076792	annotation not available (236 aa)
	LOC101066372	MADS-box domain-containing protein. (514 aa)
	H2TXA3_TAKRU	Zinc finger protein 512. (365 aa)
	LOC101062973	Myocardin related transcription factor Bb. (742 aa)
	LOC101074584	Transforming growth factor beta; Belongs to the TGF-beta family. (420 aa)
	srebf1	Sterol regulatory element binding transcription factor 1. (1167 aa)
	LOC101075732	Uncharacterized protein LOC101075732 isoform X1. (505 aa)
	myocd	Myocardin. (909 aa)
	Rc3h2	Ring finger and CCCH-type domains 2. (1042 aa)
	wt1	WT1 transcription factor b. (417 aa)
	rc3h1	Ring finger and CCCH-type domains 1b. (1123 aa)
	LOC101064831	Krueppel-like factor 5 isoform X1. (423 aa)
	ENSTRUP00000048455	BZIP domain-containing protein. (123 aa)
	pdgfb	Platelet-derived growth factor beta polypeptide a; Belongs to the PDGF/VEGF growth factor family. (542 aa)
	srf	Serum response factor b. (541 aa)
	mrtfb	Myocardin related transcription factor Ba. (1081 aa)
	ppard	Uncharacterized protein. (491 aa)
	LOC101066276	Kruppel-like factor 5 like. (438 aa)
	zc3h12a	Si:dkey-206d17.12. (176 aa)
	ENSTRUP00000081768	Krueppel-like factor 5. (69 aa)
	lin28b	Lin-28 homolog B (C. elegans). (230 aa)
	PNPT1	Polyribonucleotide nucleotidyltransferase 1. (797 aa)
	tent2	Terminal nucleotidyltransferase 2. (514 aa)
	ENSTRUP00000073004	Zinc finger protein 512. (455 aa)
	ENSTRUP00000072715	Kruppel-like factor 5 like. (323 aa)
	nfatc3	Nuclear factor of activated T cells 3a. (1109 aa)
	LOC101072080	Mothers against decapentaplegic homolog. (651 aa)
	nfatc4	Uncharacterized protein. (893 aa)
	LOC101071561	Uncharacterized protein. (1273 aa)
	LOC101068345	Uncharacterized protein. (441 aa)
	drosha	Drosha ribonuclease III. (1353 aa)
	LOC101069029	Zinc finger, SWIM-type containing 8. (2255 aa)
	LOC101066787-2	Transforming growth factor beta-2 proprotein. (413 aa)
	LOC101076071	GATA binding protein 2a. (461 aa)
	fosl1	FOS-like antigen 1a. (338 aa)
	il10	Interleukin 10. (227 aa)
	LOC101068466	Mothers against decapentaplegic homolog 4-like. (557 aa)
	LOC101068522	Progesterone immunomodulatory binding factor 1. (491 aa)
	LOC101066787	Transforming growth factor beta; Belongs to the TGF-beta family. (413 aa)
	ZNF512B	Zinc finger protein 512B. (816 aa)
	GATA2	GATA binding protein 2. (472 aa)
	SMAD4	Mothers against decapentaplegic homolog. (521 aa)
	LOC101077059	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family. (327 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000048455	LOC101077059	ENSTRUP00000048455	ENSTRUP00000048623	BZIP domain-containing protein.	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	0.834
ENSTRUP00000048455	nfatc3	ENSTRUP00000048455	ENSTRUP00000071934	BZIP domain-containing protein.	Nuclear factor of activated T cells 3a.	0.457
ENSTRUP00000076792	LOC101077059	ENSTRUP00000076792	ENSTRUP00000048623	annotation not available	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	0.436
GATA2	LOC101077059	ENSTRUP00000048863	ENSTRUP00000048623	GATA binding protein 2.	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	0.606
LOC101062973	LOC101066372	ENSTRUP00000030087	ENSTRUP00000028912	Myocardin related transcription factor Bb.	MADS-box domain-containing protein.	0.729
LOC101062973	srf	ENSTRUP00000030087	ENSTRUP00000044937	Myocardin related transcription factor Bb.	Serum response factor b.	0.729
LOC101066372	LOC101062973	ENSTRUP00000028912	ENSTRUP00000030087	MADS-box domain-containing protein.	Myocardin related transcription factor Bb.	0.729
LOC101066372	LOC101071561	ENSTRUP00000028912	ENSTRUP00000063389	MADS-box domain-containing protein.	Uncharacterized protein.	0.729
LOC101066372	mrtfb	ENSTRUP00000028912	ENSTRUP00000043405	MADS-box domain-containing protein.	Myocardin related transcription factor Ba.	0.801
LOC101066372	myocd	ENSTRUP00000028912	ENSTRUP00000005789	MADS-box domain-containing protein.	Myocardin.	0.856
LOC101066372	nfatc3	ENSTRUP00000028912	ENSTRUP00000071934	MADS-box domain-containing protein.	Nuclear factor of activated T cells 3a.	0.469
LOC101066372	srf	ENSTRUP00000028912	ENSTRUP00000044937	MADS-box domain-containing protein.	Serum response factor b.	0.903
LOC101066787	LOC101074584	ENSTRUP00000052905	ENSTRUP00000033497	Transforming growth factor beta; Belongs to the TGF-beta family.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.901
LOC101068466	LOC101077059	ENSTRUP00000053126	ENSTRUP00000048623	Mothers against decapentaplegic homolog 4-like.	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	0.436
LOC101068466	SMAD4	ENSTRUP00000053126	ENSTRUP00000048686	Mothers against decapentaplegic homolog 4-like.	Mothers against decapentaplegic homolog.	0.901
LOC101071561	LOC101066372	ENSTRUP00000063389	ENSTRUP00000028912	Uncharacterized protein.	MADS-box domain-containing protein.	0.729
LOC101071561	srf	ENSTRUP00000063389	ENSTRUP00000044937	Uncharacterized protein.	Serum response factor b.	0.775
LOC101072080	LOC101077059	ENSTRUP00000069930	ENSTRUP00000048623	Mothers against decapentaplegic homolog.	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	0.436
LOC101074584	LOC101066787	ENSTRUP00000033497	ENSTRUP00000052905	Transforming growth factor beta; Belongs to the TGF-beta family.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.901
LOC101076071	LOC101077059	ENSTRUP00000056575	ENSTRUP00000048623	GATA binding protein 2a.	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	0.606