12 items (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101066819	Calcium binding protein 2a. (229 aa)
	LOC101074600	Uncharacterized protein. (386 aa)
	LOC101074122	Uncharacterized protein. (232 aa)
	ENSTRUP00000057195	Troponin T2c, cardiac. (275 aa)
	H2UG40_TAKRU	Troponin T type 1 (skeletal, slow). (231 aa)
	LOC101062822	Troponin T1, slow skeletal type. (287 aa)
	LOC101065517	Calcium binding protein 1b. (433 aa)
	LOC101068510	Uncharacterized protein. (307 aa)
	PRRC2B	Proline rich coiled-coil 2B. (2170 aa)
	nkx2-5	NK2 homeobox 5. (324 aa)
	LOC101063225	Calcium binding protein 2b. (271 aa)
	tnnt2	Troponin T type 2a (cardiac). (299 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2UG40_TAKRU	tnnt2	ENSTRUP00000074604	ENSTRUP00000029972	Troponin T type 1 (skeletal, slow).	Troponin T type 2a (cardiac).	0.444
LOC101062822	tnnt2	ENSTRUP00000075016	ENSTRUP00000029972	Troponin T1, slow skeletal type.	Troponin T type 2a (cardiac).	0.448
nkx2-5	tnnt2	ENSTRUP00000027268	ENSTRUP00000029972	NK2 homeobox 5.	Troponin T type 2a (cardiac).	0.607
tnnt2	H2UG40_TAKRU	ENSTRUP00000029972	ENSTRUP00000074604	Troponin T type 2a (cardiac).	Troponin T type 1 (skeletal, slow).	0.444
tnnt2	LOC101062822	ENSTRUP00000029972	ENSTRUP00000075016	Troponin T type 2a (cardiac).	Troponin T1, slow skeletal type.	0.448
tnnt2	nkx2-5	ENSTRUP00000029972	ENSTRUP00000027268	Troponin T type 2a (cardiac).	NK2 homeobox 5.	0.607