(17 nodes) Opsin network (Takifugu rubripes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101067792	Teleost multiple tissue opsin 3a. (326 aa)
	LOC101073282-2	Parapinopsin a. (349 aa)
	LOC101075804	Vertebrate ancient long opsin b. (390 aa)
	rho	Rhodopsin. (353 aa)
	opn4	Opsin 4a (melanopsin). (498 aa)
	opn3	Opsin 3. (387 aa)
	LOC101070008	Parapinopsin b. (336 aa)
	LOC101070147	Opsin 1 (cone pigments), short-wave-sensitive 2. (356 aa)
	LOC101070377	Opsin 1 (cone pigments), long-wave-sensitive, 1. (357 aa)
	LOC101074685	Teleost multiple tissue opsin 2b. (360 aa)
	LOC101066300	Opsin 4.1. (463 aa)
	LOC101079163	Rhodopsin. (349 aa)
	LOC101080046	Opsin 4xa. (423 aa)
	LOC101072554	Parietopsin. (374 aa)
	tmt-opsin	G_PROTEIN_RECEP_F1_2 domain-containing protein. (402 aa)
	LOC619285	Rhodopsin. (352 aa)
	LOC778011	Rhodopsin. (353 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101066300	LOC101070147	ENSTRUP00000051233	ENSTRUP00000032986	Opsin 4.1.	Opsin 1 (cone pigments), short-wave-sensitive 2.	0.433
LOC101066300	opn3	ENSTRUP00000051233	ENSTRUP00000029288	Opsin 4.1.	Opsin 3.	0.471
LOC101070147	LOC101066300	ENSTRUP00000032986	ENSTRUP00000051233	Opsin 1 (cone pigments), short-wave-sensitive 2.	Opsin 4.1.	0.433
LOC101070147	LOC101070377	ENSTRUP00000032986	ENSTRUP00000033120	Opsin 1 (cone pigments), short-wave-sensitive 2.	Opsin 1 (cone pigments), long-wave-sensitive, 1.	0.662
LOC101070147	LOC101072554	ENSTRUP00000032986	ENSTRUP00000072980	Opsin 1 (cone pigments), short-wave-sensitive 2.	Parietopsin.	0.408
LOC101070147	LOC101074685	ENSTRUP00000032986	ENSTRUP00000034325	Opsin 1 (cone pigments), short-wave-sensitive 2.	Teleost multiple tissue opsin 2b.	0.408
LOC101070147	LOC101075804	ENSTRUP00000032986	ENSTRUP00000025353	Opsin 1 (cone pigments), short-wave-sensitive 2.	Vertebrate ancient long opsin b.	0.650
LOC101070147	LOC101079163	ENSTRUP00000032986	ENSTRUP00000061254	Opsin 1 (cone pigments), short-wave-sensitive 2.	Rhodopsin.	0.620
LOC101070147	LOC101080046	ENSTRUP00000032986	ENSTRUP00000070432	Opsin 1 (cone pigments), short-wave-sensitive 2.	Opsin 4xa.	0.437
LOC101070147	LOC619285	ENSTRUP00000032986	ENSTRUP00000005472	Opsin 1 (cone pigments), short-wave-sensitive 2.	Rhodopsin.	0.617
LOC101070147	LOC778011	ENSTRUP00000032986	ENSTRUP00000010753	Opsin 1 (cone pigments), short-wave-sensitive 2.	Rhodopsin.	0.547
LOC101070147	opn3	ENSTRUP00000032986	ENSTRUP00000029288	Opsin 1 (cone pigments), short-wave-sensitive 2.	Opsin 3.	0.476
LOC101070147	opn4	ENSTRUP00000032986	ENSTRUP00000028684	Opsin 1 (cone pigments), short-wave-sensitive 2.	Opsin 4a (melanopsin).	0.437
LOC101070147	rho	ENSTRUP00000032986	ENSTRUP00000026809	Opsin 1 (cone pigments), short-wave-sensitive 2.	Rhodopsin.	0.548
LOC101070147	tmt-opsin	ENSTRUP00000032986	ENSTRUP00000003685	Opsin 1 (cone pigments), short-wave-sensitive 2.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.408
LOC101070377	LOC101070147	ENSTRUP00000033120	ENSTRUP00000032986	Opsin 1 (cone pigments), long-wave-sensitive, 1.	Opsin 1 (cone pigments), short-wave-sensitive 2.	0.662
LOC101070377	LOC101079163	ENSTRUP00000033120	ENSTRUP00000061254	Opsin 1 (cone pigments), long-wave-sensitive, 1.	Rhodopsin.	0.435
LOC101070377	LOC619285	ENSTRUP00000033120	ENSTRUP00000005472	Opsin 1 (cone pigments), long-wave-sensitive, 1.	Rhodopsin.	0.455
LOC101070377	LOC778011	ENSTRUP00000033120	ENSTRUP00000010753	Opsin 1 (cone pigments), long-wave-sensitive, 1.	Rhodopsin.	0.435
LOC101070377	opn3	ENSTRUP00000033120	ENSTRUP00000029288	Opsin 1 (cone pigments), long-wave-sensitive, 1.	Opsin 3.	0.545