27 items (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NFATC1	Nuclear factor of activated T cells 1. (928 aa)
	LOC101062161	Plexin A1a. (1910 aa)
	LOC101079063	Nuclear factor of activated T cells 5a. (1430 aa)
	relb	V-rel avian reticuloendotheliosis viral oncogene homolog B. (591 aa)
	nfatc3	Nuclear factor of activated T cells 3a. (1109 aa)
	plxna4	Plexin A4. (1913 aa)
	LOC101066888	EBF transcription factor 1. (599 aa)
	met	Uncharacterized protein. (1425 aa)
	LOC101073743	V-rel avian reticuloendotheliosis viral oncogene homolog A. (626 aa)
	ebf3	EBF transcription factor 3a. (593 aa)
	plxna3	Plexin A3. (1910 aa)
	mst1r	Macrophage stimulating 1 receptor b. (1374 aa)
	EBF1	EBF transcription factor 1. (598 aa)
	btbd10	Nuclear factor of activated T cells 5b. (1322 aa)
	LOC101068861	RHD domain-containing protein. (875 aa)
	ENSTRUP00000056046	Nuclear factor of activated T cells 1. (813 aa)
	plxna2	Plexin A2. (1901 aa)
	LOC101061101	REL proto-oncogene, NF-kB subunit. (642 aa)
	H2UK42_TAKRU	Sema domain-containing protein. (1981 aa)
	LOC101072330	Plexin b2b. (1849 aa)
	exoc2	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family. (922 aa)
	LOC101062443	Plexin A1. (1896 aa)
	nfatc2	Nuclear factor of activated T cells 2a. (884 aa)
	LOC101074082	EBF transcription factor 2. (619 aa)
	LOC101068409	Plexin b2a. (1556 aa)
	LOC101071528	Macrophage stimulating 1 receptor a. (1375 aa)
	PLXND1	Plexin D1. (1802 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000056046	NFATC1	ENSTRUP00000056046	ENSTRUP00000044649	Nuclear factor of activated T cells 1.	Nuclear factor of activated T cells 1.	0.902
ENSTRUP00000056046	nfatc2	ENSTRUP00000056046	ENSTRUP00000015904	Nuclear factor of activated T cells 1.	Nuclear factor of activated T cells 2a.	0.651
ENSTRUP00000056046	nfatc3	ENSTRUP00000056046	ENSTRUP00000071934	Nuclear factor of activated T cells 1.	Nuclear factor of activated T cells 3a.	0.512
H2UK42_TAKRU	LOC101071528	ENSTRUP00000067092	ENSTRUP00000025241	Sema domain-containing protein.	Macrophage stimulating 1 receptor a.	0.549
H2UK42_TAKRU	met	ENSTRUP00000067092	ENSTRUP00000078415	Sema domain-containing protein.	Uncharacterized protein.	0.557
H2UK42_TAKRU	mst1r	ENSTRUP00000067092	ENSTRUP00000035729	Sema domain-containing protein.	Macrophage stimulating 1 receptor b.	0.549
LOC101061101	LOC101079063	ENSTRUP00000065182	ENSTRUP00000027808	REL proto-oncogene, NF-kB subunit.	Nuclear factor of activated T cells 5a.	0.660
LOC101061101	relb	ENSTRUP00000065182	ENSTRUP00000028635	REL proto-oncogene, NF-kB subunit.	V-rel avian reticuloendotheliosis viral oncogene homolog B.	0.667
LOC101062161	LOC101071528	ENSTRUP00000068851	ENSTRUP00000025241	Plexin A1a.	Macrophage stimulating 1 receptor a.	0.428
LOC101062161	met	ENSTRUP00000068851	ENSTRUP00000078415	Plexin A1a.	Uncharacterized protein.	0.428
LOC101062161	mst1r	ENSTRUP00000068851	ENSTRUP00000035729	Plexin A1a.	Macrophage stimulating 1 receptor b.	0.428
LOC101062443	LOC101071528	ENSTRUP00000008385	ENSTRUP00000025241	Plexin A1.	Macrophage stimulating 1 receptor a.	0.428
LOC101062443	met	ENSTRUP00000008385	ENSTRUP00000078415	Plexin A1.	Uncharacterized protein.	0.428
LOC101062443	mst1r	ENSTRUP00000008385	ENSTRUP00000035729	Plexin A1.	Macrophage stimulating 1 receptor b.	0.428
LOC101068409	LOC101071528	ENSTRUP00000021867	ENSTRUP00000025241	Plexin b2a.	Macrophage stimulating 1 receptor a.	0.549
LOC101068409	met	ENSTRUP00000021867	ENSTRUP00000078415	Plexin b2a.	Uncharacterized protein.	0.549
LOC101068409	mst1r	ENSTRUP00000021867	ENSTRUP00000035729	Plexin b2a.	Macrophage stimulating 1 receptor b.	0.549
LOC101068861	nfatc2	ENSTRUP00000046996	ENSTRUP00000015904	RHD domain-containing protein.	Nuclear factor of activated T cells 2a.	0.904
LOC101071528	H2UK42_TAKRU	ENSTRUP00000025241	ENSTRUP00000067092	Macrophage stimulating 1 receptor a.	Sema domain-containing protein.	0.549
LOC101071528	LOC101062161	ENSTRUP00000025241	ENSTRUP00000068851	Macrophage stimulating 1 receptor a.	Plexin A1a.	0.428