(26 nodes) PAS fold network (Takifugu rubripes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101062698	Hypoxia inducible factor 1 subunit alpha, like. (707 aa)
	ncoa2	Nuclear receptor coactivator 2. (1518 aa)
	ARNTL2	Aryl hydrocarbon receptor nuclear translocator like 2. (605 aa)
	ncoa1	Nuclear receptor coactivator 1. (1370 aa)
	LOC101065207	Aryl hydrocarbon receptor nuclear translocator-like 2. (640 aa)
	arntl	Aryl hydrocarbon receptor nuclear translocator-like 1a. (608 aa)
	ahr2a	Uncharacterized protein. (929 aa)
	LOC101077966	Nuclear receptor coactivator 3. (1526 aa)
	hif1a	Hypoxia inducible factor 1 subunit alpha a. (763 aa)
	npas1	Neuronal PAS domain protein 1. (456 aa)
	LOC101065307	Neuronal PAS domain protein 2. (893 aa)
	CLOCK	Clock circadian regulator a. (860 aa)
	pde8a	Phosphodiesterase. (817 aa)
	LOC101077956	SIM bHLH transcription factor 1. (760 aa)
	ahr2c	Uncharacterized protein. (818 aa)
	arnt2	Aryl-hydrocarbon receptor nuclear translocator 2. (717 aa)
	LOC101068454	Uncharacterized protein. (1565 aa)
	ahr2b	PAS domain-containing protein. (980 aa)
	LOC101067536	Endothelial PAS domain protein 1b. (858 aa)
	NPAS3	Neuronal PAS domain protein 3. (1043 aa)
	LOC101073418	Aryl hydrocarbon receptor nuclear translocator. (868 aa)
	LOC101066852	Uncharacterized protein. (558 aa)
	ahr1a	Uncharacterized protein. (975 aa)
	LOC101078879	Clock circadian regulator b. (837 aa)
	LOC101064944	Uncharacterized protein. (1498 aa)
	ahrr	Uncharacterized protein. (691 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARNTL2	CLOCK	ENSTRUP00000006975	ENSTRUP00000039610	Aryl hydrocarbon receptor nuclear translocator like 2.	Clock circadian regulator a.	0.824
ARNTL2	LOC101062698	ENSTRUP00000006975	ENSTRUP00000079457	Aryl hydrocarbon receptor nuclear translocator like 2.	Hypoxia inducible factor 1 subunit alpha, like.	0.546
ARNTL2	LOC101065307	ENSTRUP00000006975	ENSTRUP00000033767	Aryl hydrocarbon receptor nuclear translocator like 2.	Neuronal PAS domain protein 2.	0.825
ARNTL2	LOC101067536	ENSTRUP00000006975	ENSTRUP00000060918	Aryl hydrocarbon receptor nuclear translocator like 2.	Endothelial PAS domain protein 1b.	0.546
ARNTL2	LOC101077956	ENSTRUP00000006975	ENSTRUP00000046748	Aryl hydrocarbon receptor nuclear translocator like 2.	SIM bHLH transcription factor 1.	0.479
ARNTL2	LOC101078879	ENSTRUP00000006975	ENSTRUP00000076993	Aryl hydrocarbon receptor nuclear translocator like 2.	Clock circadian regulator b.	0.793
ARNTL2	NPAS3	ENSTRUP00000006975	ENSTRUP00000062125	Aryl hydrocarbon receptor nuclear translocator like 2.	Neuronal PAS domain protein 3.	0.587
ARNTL2	ahr1a	ENSTRUP00000006975	ENSTRUP00000076089	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.536
ARNTL2	ahr2a	ENSTRUP00000006975	ENSTRUP00000023397	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.536
ARNTL2	ahr2b	ENSTRUP00000006975	ENSTRUP00000059510	Aryl hydrocarbon receptor nuclear translocator like 2.	PAS domain-containing protein.	0.536
ARNTL2	ahr2c	ENSTRUP00000006975	ENSTRUP00000047268	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.536
ARNTL2	ahrr	ENSTRUP00000006975	ENSTRUP00000080291	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.536
ARNTL2	hif1a	ENSTRUP00000006975	ENSTRUP00000030603	Aryl hydrocarbon receptor nuclear translocator like 2.	Hypoxia inducible factor 1 subunit alpha a.	0.546
ARNTL2	npas1	ENSTRUP00000006975	ENSTRUP00000031189	Aryl hydrocarbon receptor nuclear translocator like 2.	Neuronal PAS domain protein 1.	0.612
CLOCK	ARNTL2	ENSTRUP00000039610	ENSTRUP00000006975	Clock circadian regulator a.	Aryl hydrocarbon receptor nuclear translocator like 2.	0.824
CLOCK	LOC101062698	ENSTRUP00000039610	ENSTRUP00000079457	Clock circadian regulator a.	Hypoxia inducible factor 1 subunit alpha, like.	0.540
CLOCK	LOC101065207	ENSTRUP00000039610	ENSTRUP00000019472	Clock circadian regulator a.	Aryl hydrocarbon receptor nuclear translocator-like 2.	0.826
CLOCK	LOC101067536	ENSTRUP00000039610	ENSTRUP00000060918	Clock circadian regulator a.	Endothelial PAS domain protein 1b.	0.540
CLOCK	LOC101077956	ENSTRUP00000039610	ENSTRUP00000046748	Clock circadian regulator a.	SIM bHLH transcription factor 1.	0.481
CLOCK	NPAS3	ENSTRUP00000039610	ENSTRUP00000062125	Clock circadian regulator a.	Neuronal PAS domain protein 3.	0.615