42 items (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101071870	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ga; Belongs to the semaphorin family. (744 aa)
	LOC101072191	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa; Belongs to the semaphorin family. (822 aa)
	LOC101072330	Plexin b2b. (1849 aa)
	sema4b	Sema domain-containing protein; Belongs to the semaphorin family. (837 aa)
	itgb5	Integrin beta; Belongs to the integrin beta chain family. (836 aa)
	LOC101062161	Plexin A1a. (1910 aa)
	LOC101071641	Integrin beta. (772 aa)
	atrn	Attractin. (1382 aa)
	LOC101062443	Plexin A1. (1896 aa)
	LOC101066092	Uncharacterized protein; Belongs to the semaphorin family. (883 aa)
	LOC101076911	Semaphorin 4e; Belongs to the semaphorin family. (730 aa)
	itgb8	Integrin beta; Belongs to the integrin beta chain family. (793 aa)
	LOC101068409	Plexin b2a. (1556 aa)
	plxdc2	Plexin domain containing 2. (528 aa)
	sema3d	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D; Belongs to the semaphorin family. (808 aa)
	LOC101071528	Macrophage stimulating 1 receptor a. (1375 aa)
	PLXND1	Plexin D1. (1802 aa)
	sema3b	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B; Belongs to the semaphorin family. (808 aa)
	plxna3	Plexin A3. (1910 aa)
	SEMA4D	Semaphorin 4D; Belongs to the semaphorin family. (919 aa)
	LOC101062791	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fb; Belongs to the semaphorin family. (805 aa)
	LOC101075584	Integrin beta; Belongs to the integrin beta chain family. (808 aa)
	itgb6	Integrin beta; Belongs to the integrin beta chain family. (784 aa)
	sema5b	Sema domain-containing protein. (1105 aa)
	LOC101071388	Si:ch211-129c21.1; Belongs to the semaphorin family. (803 aa)
	LOC101070417	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3H; Belongs to the semaphorin family. (767 aa)
	LOC101064427	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family. (845 aa)
	sema3a	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family. (802 aa)
	sema3c	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C; Belongs to the semaphorin family. (862 aa)
	plxna2	Plexin A2. (1901 aa)
	sema5a	Sema domain-containing protein. (1080 aa)
	H2UK42_TAKRU	Sema domain-containing protein. (1981 aa)
	sema3g	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl; Belongs to the semaphorin family. (803 aa)
	sema3e	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family. (785 aa)
	LOC101062823	Attractin-like 1b. (1406 aa)
	LOC105417227	Sema domain-containing protein; Belongs to the semaphorin family. (613 aa)
	LOC101067092	Attractin-like 1a. (1397 aa)
	plxna4	Plexin A4. (1913 aa)
	met	Uncharacterized protein. (1425 aa)
	sema7a	Semaphorin 7A; Belongs to the semaphorin family. (684 aa)
	mst1r	Macrophage stimulating 1 receptor b. (1374 aa)
	sema4c	Uncharacterized protein; Belongs to the semaphorin family. (864 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2UK42_TAKRU	LOC101064427	ENSTRUP00000067092	ENSTRUP00000056897	Sema domain-containing protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	0.508
H2UK42_TAKRU	LOC101066092	ENSTRUP00000067092	ENSTRUP00000011855	Sema domain-containing protein.	Uncharacterized protein; Belongs to the semaphorin family.	0.464
H2UK42_TAKRU	LOC101071388	ENSTRUP00000067092	ENSTRUP00000051635	Sema domain-containing protein.	Si:ch211-129c21.1; Belongs to the semaphorin family.	0.730
H2UK42_TAKRU	LOC101071528	ENSTRUP00000067092	ENSTRUP00000025241	Sema domain-containing protein.	Macrophage stimulating 1 receptor a.	0.549
H2UK42_TAKRU	LOC101076911	ENSTRUP00000067092	ENSTRUP00000015902	Sema domain-containing protein.	Semaphorin 4e; Belongs to the semaphorin family.	0.730
H2UK42_TAKRU	LOC105417227	ENSTRUP00000067092	ENSTRUP00000083105	Sema domain-containing protein.	Sema domain-containing protein; Belongs to the semaphorin family.	0.549
H2UK42_TAKRU	SEMA4D	ENSTRUP00000067092	ENSTRUP00000069334	Sema domain-containing protein.	Semaphorin 4D; Belongs to the semaphorin family.	0.753
H2UK42_TAKRU	met	ENSTRUP00000067092	ENSTRUP00000078415	Sema domain-containing protein.	Uncharacterized protein.	0.557
H2UK42_TAKRU	mst1r	ENSTRUP00000067092	ENSTRUP00000035729	Sema domain-containing protein.	Macrophage stimulating 1 receptor b.	0.549
H2UK42_TAKRU	sema3a	ENSTRUP00000067092	ENSTRUP00000070075	Sema domain-containing protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family.	0.508
H2UK42_TAKRU	sema3b	ENSTRUP00000067092	ENSTRUP00000078387	Sema domain-containing protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B; Belongs to the semaphorin family.	0.508
H2UK42_TAKRU	sema3e	ENSTRUP00000067092	ENSTRUP00000079630	Sema domain-containing protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family.	0.581
H2UK42_TAKRU	sema3g	ENSTRUP00000067092	ENSTRUP00000079090	Sema domain-containing protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl; Belongs to the semaphorin family.	0.549
H2UK42_TAKRU	sema4b	ENSTRUP00000067092	ENSTRUP00000072325	Sema domain-containing protein.	Sema domain-containing protein; Belongs to the semaphorin family.	0.589
H2UK42_TAKRU	sema4c	ENSTRUP00000067092	ENSTRUP00000035931	Sema domain-containing protein.	Uncharacterized protein; Belongs to the semaphorin family.	0.464
H2UK42_TAKRU	sema5a	ENSTRUP00000067092	ENSTRUP00000064743	Sema domain-containing protein.	Sema domain-containing protein.	0.688
H2UK42_TAKRU	sema5b	ENSTRUP00000067092	ENSTRUP00000048898	Sema domain-containing protein.	Sema domain-containing protein.	0.653
H2UK42_TAKRU	sema7a	ENSTRUP00000067092	ENSTRUP00000034641	Sema domain-containing protein.	Semaphorin 7A; Belongs to the semaphorin family.	0.549
LOC101062161	LOC101062791	ENSTRUP00000068851	ENSTRUP00000069047	Plexin A1a.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fb; Belongs to the semaphorin family.	0.409
LOC101062161	LOC101064427	ENSTRUP00000068851	ENSTRUP00000056897	Plexin A1a.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	0.554