6 items (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	lef1	Lymphoid enhancer-binding factor 1. (377 aa)
	LOC101074632	HMG box domain-containing protein. (585 aa)
	LOC105419230	Uncharacterized protein. (809 aa)
	tcf7l1	Transcription factor 7 like 1b. (592 aa)
	tcf7l2	Transcription factor 7 like 2. (632 aa)
	tcf7	Transcription factor 7. (491 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101074632	lef1	ENSTRUP00000047734	ENSTRUP00000073083	HMG box domain-containing protein.	Lymphoid enhancer-binding factor 1.	0.514
LOC105419230	lef1	ENSTRUP00000055711	ENSTRUP00000073083	Uncharacterized protein.	Lymphoid enhancer-binding factor 1.	0.514
lef1	LOC101074632	ENSTRUP00000073083	ENSTRUP00000047734	Lymphoid enhancer-binding factor 1.	HMG box domain-containing protein.	0.514
lef1	LOC105419230	ENSTRUP00000073083	ENSTRUP00000055711	Lymphoid enhancer-binding factor 1.	Uncharacterized protein.	0.514
lef1	tcf7	ENSTRUP00000073083	ENSTRUP00000087486	Lymphoid enhancer-binding factor 1.	Transcription factor 7.	0.712
lef1	tcf7l1	ENSTRUP00000073083	ENSTRUP00000058361	Lymphoid enhancer-binding factor 1.	Transcription factor 7 like 1b.	0.531
lef1	tcf7l2	ENSTRUP00000073083	ENSTRUP00000072913	Lymphoid enhancer-binding factor 1.	Transcription factor 7 like 2.	0.514
tcf7	lef1	ENSTRUP00000087486	ENSTRUP00000073083	Transcription factor 7.	Lymphoid enhancer-binding factor 1.	0.712
tcf7l1	lef1	ENSTRUP00000058361	ENSTRUP00000073083	Transcription factor 7 like 1b.	Lymphoid enhancer-binding factor 1.	0.531
tcf7l2	lef1	ENSTRUP00000072913	ENSTRUP00000073083	Transcription factor 7 like 2.	Lymphoid enhancer-binding factor 1.	0.514