37 items (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	spry1	Sprouty homolog 1, antagonist of FGF signaling (Drosophila). (358 aa)
	eps15l1	Epidermal growth factor receptor pathway substrate 15-like 1a. (1013 aa)
	H2SX87_TAKRU	Sprouty RTK signaling antagonist 2. (370 aa)
	ENSTRUP00000086731	annotation not available (124 aa)
	ptprt	Protein tyrosine phosphatase receptor type T. (1480 aa)
	PTPRM	Protein tyrosine phosphatase receptor type M. (1567 aa)
	LOC101065692	SH3 domain containing GRB2 like 2a, endophilin A1. (363 aa)
	stam2	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2. (507 aa)
	LOC101068145	Uncharacterized protein. (191 aa)
	LOC101067723	Cell division cycle 42. (191 aa)
	LOC101073733	Uncharacterized protein. (202 aa)
	LOC101063020	Epidermal growth factor receptor pathway substrate 15 like 1. (941 aa)
	ENSTRUP00000074040	annotation not available (139 aa)
	ptprk	Protein tyrosine phosphatase receptor type K. (1514 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	sh3gl1	SH3-domain GRB2-like 1b. (368 aa)
	ENSTRUP00000070309	annotation not available (862 aa)
	LOC101066462	Rho guanine nucleotide exchange factor (GEF) 7b. (851 aa)
	stam	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1. (531 aa)
	LOC101070329	Uncharacterized protein. (351 aa)
	cbl	Cbl proto-oncogene, E3 ubiquitin protein ligase. (951 aa)
	LOC101078686	EGF-like domain-containing protein. (194 aa)
	LOC101076984	Transforming growth factor, alpha. (276 aa)
	ENSTRUP00000053164	EGF-like domain-containing protein. (114 aa)
	LOC101061204	Uncharacterized protein. (205 aa)
	cd2ap	CD2-associated protein. (688 aa)
	LOC101076422	Crystallin, beta B1, like 3; Belongs to the beta/gamma-crystallin family. (231 aa)
	LOC101064301	Rho guanine nucleotide exchange factor (GEF) 7a. (863 aa)
	LOC101070370	Uncharacterized protein. (862 aa)
	hgs	Hepatocyte growth factor-regulated tyrosine kinase substrate. (773 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	sh3d21	SH3 domain containing 21. (483 aa)
	ptpn3	Protein tyrosine phosphatase non-receptor type 3. (875 aa)
	grb2	Growth factor receptor-bound protein 2b. (220 aa)
	sh3kbp1	SH3-domain kinase binding protein 1. (624 aa)
	LOC101073177	SH3-domain GRB2-like 1a. (368 aa)
	eps15	Epidermal growth factor receptor pathway substrate 15. (1098 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000053164	ENSTRUP00000074040	ENSTRUP00000053164	ENSTRUP00000074040	EGF-like domain-containing protein.	annotation not available	0.732
ENSTRUP00000053164	H2SX87_TAKRU	ENSTRUP00000053164	ENSTRUP00000087235	EGF-like domain-containing protein.	Sprouty RTK signaling antagonist 2.	0.601
ENSTRUP00000053164	LOC101061204	ENSTRUP00000053164	ENSTRUP00000049272	EGF-like domain-containing protein.	Uncharacterized protein.	0.447
ENSTRUP00000053164	LOC101067723	ENSTRUP00000053164	ENSTRUP00000078989	EGF-like domain-containing protein.	Cell division cycle 42.	0.517
ENSTRUP00000053164	LOC101068145	ENSTRUP00000053164	ENSTRUP00000080891	EGF-like domain-containing protein.	Uncharacterized protein.	0.492
ENSTRUP00000053164	LOC101073733	ENSTRUP00000053164	ENSTRUP00000078185	EGF-like domain-containing protein.	Uncharacterized protein.	0.517
ENSTRUP00000053164	LOC101076984	ENSTRUP00000053164	ENSTRUP00000056700	EGF-like domain-containing protein.	Transforming growth factor, alpha.	0.744
ENSTRUP00000053164	LOC101078686	ENSTRUP00000053164	ENSTRUP00000059382	EGF-like domain-containing protein.	EGF-like domain-containing protein.	0.796
ENSTRUP00000053164	grb2	ENSTRUP00000053164	ENSTRUP00000020659	EGF-like domain-containing protein.	Growth factor receptor-bound protein 2b.	0.447
ENSTRUP00000070309	LOC101061204	ENSTRUP00000070309	ENSTRUP00000049272	annotation not available	Uncharacterized protein.	0.444
ENSTRUP00000070309	grb2	ENSTRUP00000070309	ENSTRUP00000020659	annotation not available	Growth factor receptor-bound protein 2b.	0.444
ENSTRUP00000074040	ENSTRUP00000053164	ENSTRUP00000074040	ENSTRUP00000053164	annotation not available	EGF-like domain-containing protein.	0.732
ENSTRUP00000074040	LOC101061204	ENSTRUP00000074040	ENSTRUP00000049272	annotation not available	Uncharacterized protein.	0.430
ENSTRUP00000074040	LOC101070370	ENSTRUP00000074040	ENSTRUP00000031224	annotation not available	Uncharacterized protein.	0.463
ENSTRUP00000074040	LOC101076984	ENSTRUP00000074040	ENSTRUP00000056700	annotation not available	Transforming growth factor, alpha.	0.577
ENSTRUP00000074040	LOC101078686	ENSTRUP00000074040	ENSTRUP00000059382	annotation not available	EGF-like domain-containing protein.	0.764
ENSTRUP00000074040	cbl	ENSTRUP00000074040	ENSTRUP00000062750	annotation not available	Cbl proto-oncogene, E3 ubiquitin protein ligase.	0.463
ENSTRUP00000074040	grb2	ENSTRUP00000074040	ENSTRUP00000020659	annotation not available	Growth factor receptor-bound protein 2b.	0.430
ENSTRUP00000074040	spry1	ENSTRUP00000074040	ENSTRUP00000051243	annotation not available	Sprouty homolog 1, antagonist of FGF signaling (Drosophila).	0.576
ENSTRUP00000086731	LOC101061204	ENSTRUP00000086731	ENSTRUP00000049272	annotation not available	Uncharacterized protein.	0.444