(82 nodes) Assembly of collagen fibrils and other multimeric structures network (Takifugu rubripes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	COL25A1	Collagen alpha-1(XXV) chain isoform X1. (474 aa)
	LOC101063822	Uncharacterized protein. (1353 aa)
	LOC115253063	Meprin A subunit alpha-like. (603 aa)
	COL8A1	Collagen type VIII alpha 1 chain. (708 aa)
	col1a2	Collagen, type I, alpha 2. (1269 aa)
	LOC101064717	Lysyl oxidase-like 2a. (744 aa)
	H2V101_TAKRU	Metalloendopeptidase. (663 aa)
	JAZF1	Juxtaposed with another zinc finger protein 1. (288 aa)
	ENSTRUP00000048246	Fibrillar collagen NC1 domain-containing protein. (118 aa)
	ENSTRUP00000051171	Uncharacterized protein. (1379 aa)
	ENSTRUP00000051515	Fibronectin type-III domain-containing protein. (189 aa)
	col8a2	Collagen, type VIII, alpha 2. (684 aa)
	LOC101076666	Metalloendopeptidase. (301 aa)
	ctsl	Si:dkey-26g8.5; Belongs to the peptidase C1 family. (350 aa)
	pxdn	Peroxidasin. (1479 aa)
	ENSTRUP00000058211	Fibrillar collagen NC1 domain-containing protein. (1178 aa)
	LOC101076114	Collagen, type I, alpha 1a. (1448 aa)
	col9a2	Procollagen, type IX, alpha 2. (691 aa)
	ENSTRUP00000061236	Fibrillar collagen NC1 domain-containing protein. (1354 aa)
	LOC101077206	Metalloendopeptidase. (262 aa)
	col17a1	Collagen alpha-1(XVII) chain isoform X1. (1401 aa)
	ENSTRUP00000063460	annotation not available (273 aa)
	LOC101075231	Collagen, type IV, alpha 6. (1716 aa)
	LOC101077206-2	High choriolytic enzyme 1-like. (262 aa)
	fghce	High choriolytic enzyme 1-like. (262 aa)
	H2U2U9_TAKRU	VWFA domain-containing protein. (1603 aa)
	ENSTRUP00000065351	Collagen type V/XI/XXIV/XXVII, alpha. (1304 aa)
	H2RLL9_TAKRU	Fibrillar collagen NC1 domain-containing protein. (530 aa)
	LOC101079510	Procollagen, type V, alpha 1. (2030 aa)
	LOC101076659	Cathepsin Ba; Belongs to the peptidase C1 family. (337 aa)
	ENSTRUP00000067167	annotation not available (311 aa)
	mmp13	Matrix metalloproteinase. (461 aa)
	col4a2	Collagen alpha-2(IV) chain. (1680 aa)
	ENSTRUP00000072890	Collagen alpha-5(IV) chain-like. (932 aa)
	LOC115247009	High choriolytic enzyme 1-like. (262 aa)
	LOC101078456	Lysyl oxidase-like 4. (750 aa)
	LOC101065331	Metalloendopeptidase. (274 aa)
	ENSTRUP00000017595	annotation not available (202 aa)
	LOC101072844	Bone morphogenetic protein 1-like isoform X1. (973 aa)
	LOC101063107	Collagen, type I, alpha 1b. (1448 aa)
	H2T9T0_TAKRU	Uncharacterized protein. (162 aa)
	LOC101062132	Lysyl oxidase-like 5b. (438 aa)
	fgc6ast2	Metalloendopeptidase. (279 aa)
	LOC105417341	Metalloendopeptidase. (284 aa)
	LOC101072013	Collagen, type XII, alpha 1a. (3017 aa)
	LOC101066490	Cathepsin S, ortholog2, tandem duplicate 1; Belongs to the peptidase C1 family. (334 aa)
	LOC101073778	Metalloendopeptidase. (260 aa)
	loxl1	Lysyl oxidase-like 1. (569 aa)
	LOC101079320	Lysyl oxidase-like 5a. (583 aa)
	mmp9	Uncharacterized protein. (631 aa)
	LOC101077035	Metalloendopeptidase. (257 aa)
	col11a1	Collagen, type XI, alpha 1a. (1582 aa)
	LOC101073548	Meprin A subunit. (703 aa)
	LOC101077542	Cathepsin L.1; Belongs to the peptidase C1 family. (337 aa)
	fglce	Metalloendopeptidase. (264 aa)
	LOC105416789	Collagen, type VIII, alpha 1b. (741 aa)
	LOC101070353	Lysyl oxidase a. (423 aa)
	loxl2	Lysyl oxidase-like 2b. (769 aa)
	LOC101076916	Metalloendopeptidase. (702 aa)
	H2SI73_TAKRU	ZnMc domain-containing protein. (578 aa)
	col11a2	Collagen, type XI, alpha 2. (1530 aa)
	LOC101075985	Si:cabz01100188.1. (886 aa)
	ENSTRUP00000088443	Collagen alpha-1(XI) chain-like isoform X1. (248 aa)
	fghce-3	Takifugu rubripes hatching enzyme (fghce), mRNA. (262 aa)
	LOC115247009-2	High choriolytic enzyme 1-like. (262 aa)
	tll1	Metalloendopeptidase. (1026 aa)
	col5a2	Collagen, type V, alpha 2a. (1495 aa)
	LOC101068949	Metalloendopeptidase. (1000 aa)
	LOC101077206-3	High choriolytic enzyme 1-like. (262 aa)
	ENSTRUP00000085046	annotation not available (224 aa)
	LOC101064920	Juxtaposed with another zinc finger protein 1. (243 aa)
	ENSTRUP00000083227	annotation not available (320 aa)
	H2UD32_TAKRU	Uncharacterized protein. (505 aa)
	LOC101063070	Metalloendopeptidase. (299 aa)
	ENSTRUP00000081128	annotation not available (232 aa)
	col4a5	Collagen IV NC1 domain-containing protein. (1685 aa)
	ENSTRUP00000078799	annotation not available (353 aa)
	LOC115246833	Metalloendopeptidase. (262 aa)
	lamb3	Uncharacterized protein. (74 aa)
	ENSTRUP00000083220	Collagen alpha-1(IX) chain-like. (309 aa)
	fgc6ast1	Metalloendopeptidase. (280 aa)
	fghce-2	Takifugu rubripes hatching enzyme (fghce), mRNA. (262 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COL25A1	ENSTRUP00000088443	ENSTRUP00000077866	ENSTRUP00000088443	Collagen alpha-1(XXV) chain isoform X1.	Collagen alpha-1(XI) chain-like isoform X1.	0.496
COL25A1	LOC101068949	ENSTRUP00000077866	ENSTRUP00000086580	Collagen alpha-1(XXV) chain isoform X1.	Metalloendopeptidase.	0.427
COL25A1	tll1	ENSTRUP00000077866	ENSTRUP00000087895	Collagen alpha-1(XXV) chain isoform X1.	Metalloendopeptidase.	0.426
COL8A1	ENSTRUP00000088443	ENSTRUP00000039288	ENSTRUP00000088443	Collagen type VIII alpha 1 chain.	Collagen alpha-1(XI) chain-like isoform X1.	0.436
COL8A1	col8a2	ENSTRUP00000039288	ENSTRUP00000052585	Collagen type VIII alpha 1 chain.	Collagen, type VIII, alpha 2.	0.438
ENSTRUP00000048246	ENSTRUP00000051171	ENSTRUP00000048246	ENSTRUP00000051171	Fibrillar collagen NC1 domain-containing protein.	Uncharacterized protein.	0.407
ENSTRUP00000048246	col17a1	ENSTRUP00000048246	ENSTRUP00000063346	Fibrillar collagen NC1 domain-containing protein.	Collagen alpha-1(XVII) chain isoform X1.	0.407
ENSTRUP00000051171	ENSTRUP00000048246	ENSTRUP00000051171	ENSTRUP00000048246	Uncharacterized protein.	Fibrillar collagen NC1 domain-containing protein.	0.407
ENSTRUP00000051171	ENSTRUP00000058211	ENSTRUP00000051171	ENSTRUP00000058211	Uncharacterized protein.	Fibrillar collagen NC1 domain-containing protein.	0.458
ENSTRUP00000051171	ENSTRUP00000061236	ENSTRUP00000051171	ENSTRUP00000061236	Uncharacterized protein.	Fibrillar collagen NC1 domain-containing protein.	0.475
ENSTRUP00000051171	lamb3	ENSTRUP00000051171	ENSTRUP00000082678	Uncharacterized protein.	Uncharacterized protein.	0.511
ENSTRUP00000058211	ENSTRUP00000051171	ENSTRUP00000058211	ENSTRUP00000051171	Fibrillar collagen NC1 domain-containing protein.	Uncharacterized protein.	0.458
ENSTRUP00000058211	col17a1	ENSTRUP00000058211	ENSTRUP00000063346	Fibrillar collagen NC1 domain-containing protein.	Collagen alpha-1(XVII) chain isoform X1.	0.505
ENSTRUP00000061236	ENSTRUP00000051171	ENSTRUP00000061236	ENSTRUP00000051171	Fibrillar collagen NC1 domain-containing protein.	Uncharacterized protein.	0.475
ENSTRUP00000061236	col17a1	ENSTRUP00000061236	ENSTRUP00000063346	Fibrillar collagen NC1 domain-containing protein.	Collagen alpha-1(XVII) chain isoform X1.	0.489
ENSTRUP00000063460	ENSTRUP00000085046	ENSTRUP00000063460	ENSTRUP00000085046	annotation not available	annotation not available	0.516
ENSTRUP00000083220	H2T9T0_TAKRU	ENSTRUP00000083220	ENSTRUP00000021420	Collagen alpha-1(IX) chain-like.	Uncharacterized protein.	0.855
ENSTRUP00000083220	col4a5	ENSTRUP00000083220	ENSTRUP00000081894	Collagen alpha-1(IX) chain-like.	Collagen IV NC1 domain-containing protein.	0.402
ENSTRUP00000085046	ENSTRUP00000063460	ENSTRUP00000085046	ENSTRUP00000063460	annotation not available	annotation not available	0.516
ENSTRUP00000088443	COL25A1	ENSTRUP00000088443	ENSTRUP00000077866	Collagen alpha-1(XI) chain-like isoform X1.	Collagen alpha-1(XXV) chain isoform X1.	0.496