STRINGSTRING
nol12 nol12 eri1 eri1 bop1 bop1 rps15 rps15 rps8 rps8 wdr18 wdr18 RPL3L RPL3L rps10 rps10 LOC115251215 LOC115251215 RPL27A RPL27A xrn2 xrn2 heatr1 heatr1 rpl7 rpl7 rpl24 rpl24 rps15a rps15a csnk1d csnk1d mphosph10 mphosph10 rps24 rps24 LOC101068736 LOC101068736 ENSTRUP00000081676 ENSTRUP00000081676 ddx52 ddx52 ENSTRUP00000080862 ENSTRUP00000080862 utp25 utp25 rplp2 rplp2 ddx21 ddx21 ENSTRUP00000079751 ENSTRUP00000079751 las1l las1l LOC101078281 LOC101078281 ltv1 ltv1 utp18 utp18 rpl36a rpl36a Rps23 Rps23 LOC101077558 LOC101077558 rpl36 rpl36 LOC101069523 LOC101069523 tbl3 tbl3 exosc2 exosc2 rpl35 rpl35 ENSTRUP00000075405 ENSTRUP00000075405 RPL7A RPL7A LOC101067942 LOC101067942 LOC101066424 LOC101066424 rpl13a rpl13a exosc1 exosc1 LOC105419223 LOC105419223 ENSTRUP00000073006 ENSTRUP00000073006 rpl32 rpl32 rps4x rps4x rpl30 rpl30 aen aen ENSTRUP00000070071 ENSTRUP00000070071 kxd1 kxd1 Rpl29 Rpl29 LOC101061501 LOC101061501 rpl18 rpl18 rps11 rps11 ftsj3 ftsj3 rpl23a rpl23a utp15 utp15 exosc6 exosc6 LOC101068125 LOC101068125 Mphosph6 Mphosph6 rpl23 rpl23 imp3 imp3 rps3 rps3 rpl28 rpl28 RPS17 RPS17 rpl34 rpl34 nop14 nop14 LOC101069574 LOC101069574 nop56 nop56 LOC105418777 LOC105418777 rps16 rps16 noc4l noc4l LOC101066313 LOC101066313 rpl8 rpl8 rps19 rps19 LOC101077808 LOC101077808 LOC101078882 LOC101078882 rpl9 rpl9 ddx49 ddx49 rps7 rps7 RPS20 RPS20 rpl7l1 rpl7l1 rpp38 rpp38 rpl11 rpl11 rpl17 rpl17 rpl15 rpl15 LOC101071986 LOC101071986 ddx47 ddx47 rrp7a rrp7a rps6 rps6 rrp36 rrp36 LOC101068302 LOC101068302 eri2 eri2 ebna1bp2 ebna1bp2 isg20l2 isg20l2 LOC101073011 LOC101073011 riok2 riok2 rps21 rps21 Crebzf Crebzf exosc4 exosc4 wdr12 wdr12 rrp9 rrp9 mtrex mtrex rpl12 rpl12 rpl13 rpl13 ngdn ngdn rpl37 rpl37 H2VA08_TAKRU H2VA08_TAKRU rrp1b rrp1b H2V3I0_TAKRU H2V3I0_TAKRU Snu13 Snu13 LOC101074802 LOC101074802 rpl6 rpl6 pes1 pes1 rps9 rps9 rplp0 rplp0 fcf1 fcf1 rps3a rps3a rpl4 rpl4 utp3 utp3 LOC101067627 LOC101067627 pdcd11 pdcd11 LOC101072761 LOC101072761 rps18 rps18 rpl14 rpl14 rbm28 rbm28 eed eed rexo4 rexo4 gnl3l gnl3l rpp25l rpp25l exosc10 exosc10 pno1 pno1 RPS29 RPS29 c1d c1d Rps26 Rps26 utp6 utp6 RPL19 RPL19 wdr46 wdr46 rsad1 rsad1 rps27a rps27a Rpl39 Rpl39 wdr75 wdr75 tex10 tex10 rcl1 rcl1 ENSTRUP00000025250 ENSTRUP00000025250 dis3 dis3 wdr43 wdr43 exosc5 exosc5 utp11 utp11 H2TER7_TAKRU H2TER7_TAKRU LOC101074491 LOC101074491 bysl bysl exosc7 exosc7 bud23 bud23 ncl ncl bms1 bms1 rpl22 rpl22 ddx28 ddx28 LOC101065218 LOC101065218 Rps14 Rps14 dcaf13 dcaf13 rpl31 rpl31 rps2 rps2 LOC101071127 LOC101071127 dis3l2 dis3l2 utp20 utp20 gnl3 gnl3 rpl21 rpl21 nop58 nop58 RPL5-2 RPL5-2 rps12 rps12 LOC101063739 LOC101063739 tsr1 tsr1 LOC101069505 LOC101069505 fbl fbl krr1 krr1 exosc9 exosc9 imp4 imp4 rpp40 rpp40 rpl35a rpl35a RPL37A RPL37A rpl22l1 rpl22l1 riok1 riok1 wdr3 wdr3 rtca rtca LOC101068606 LOC101068606 LOC115250384 LOC115250384 exosc8 exosc8 nol11 nol11 Rps25 Rps25 RPL5 RPL5 LOC101077439 LOC101077439 nip7 nip7 rpl27 rpl27 rpl3 rpl3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
nol12Nucleolar protein 12. (228 aa)
eri1Exoribonuclease 1. (340 aa)
bop1Ribosome biogenesis protein BOP1. (777 aa)
rps15Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (155 aa)
rps840S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (219 aa)
wdr18WD repeat domain 18. (429 aa)
RPL3LRibosomal protein L3 like. (419 aa)
rps10Ribosomal protein S10. (219 aa)
LOC115251215Serine/threonine-protein kinase RIO3-like. (509 aa)
RPL27ARibosomal protein L27a. (147 aa)
xrn25'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (990 aa)
heatr1BP28CT domain-containing protein. (2160 aa)
rpl7Ribosomal protein L7. (247 aa)
rpl24Ribosomal protein L24. (223 aa)
rps15aRibosomal protein S15a; Belongs to the universal ribosomal protein uS8 family. (130 aa)
csnk1dCasein kinase 1, delta b; Belongs to the protein kinase superfamily. (405 aa)
mphosph10U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (673 aa)
rps2440S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (132 aa)
LOC101068736Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (211 aa)
ENSTRUP00000081676annotation not available (266 aa)
ddx52DEAD (Asp-Glu-Ala-Asp) box polypeptide 52. (594 aa)
ENSTRUP00000080862KRR1 small subunit processome component homolog. (412 aa)
utp25UTP25 small subunit processor component. (780 aa)
rplp2Ribosomal protein, large P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (140 aa)
ddx21DEAD (Asp-Glu-Ala-Asp) box helicase 21. (747 aa)
ENSTRUP00000079751annotation not available (219 aa)
las1lUncharacterized protein. (555 aa)
LOC101078281Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (514 aa)
ltv1LTV1 ribosome biogenesis factor. (475 aa)
utp18UTP18 small subunit processome component. (517 aa)
rpl36a60S ribosomal protein L36a. (156 aa)
Rps23Small subunit ribosomal protein S23e. (154 aa)
LOC10107755840S ribosomal protein S27. (91 aa)
rpl3660S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (151 aa)
LOC10106952340S ribosomal protein S20. (127 aa)
tbl3Transducin (beta)-like 3. (957 aa)
exosc2Exosome component 2. (296 aa)
rpl35Ribosomal protein L35. (135 aa)
ENSTRUP00000075405annotation not available (108 aa)
RPL7A60S ribosomal protein L7a; Belongs to the eukaryotic ribosomal protein eL8 family. (242 aa)
LOC101067942Ribosomal protein L26. (145 aa)
LOC101066424EMG1 N1-specific pseudouridine methyltransferase. (237 aa)
rpl13aRibosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (228 aa)
exosc1Exosome component 1. (219 aa)
LOC105419223Uncharacterized protein. (271 aa)
ENSTRUP00000073006Premelanosome protein b. (505 aa)
rpl32Ribosomal protein L32. (140 aa)
rps4x40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (263 aa)
rpl30Ribosomal protein L30. (116 aa)
aenInterferon stimulated exonuclease gene. (172 aa)
ENSTRUP00000070071annotation not available (74 aa)
kxd1KxDL motif containing 1. (194 aa)
Rpl2960S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (137 aa)
LOC101061501Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (242 aa)
rpl18Ribosomal protein L18. (223 aa)
rps11Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (187 aa)
ftsj3pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (899 aa)
rpl23aRibosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (181 aa)
utp15UTP15 small subunit processome component. (518 aa)
exosc6Exosome component 6. (274 aa)
LOC101068125TPTEP2-CSNK1E readthrough; Belongs to the protein kinase superfamily. (459 aa)
Mphosph6Sorting nexin 20. (159 aa)
rpl23Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (140 aa)
imp3IMP U3 small nucleolar ribonucleoprotein 3. (220 aa)
rps3Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (250 aa)
rpl28Ribosomal protein L28. (137 aa)
RPS17Ribosomal protein S17. (135 aa)
rpl34Ribosomal protein L34. (117 aa)
nop14NOP14 nucleolar protein homolog (yeast). (845 aa)
LOC101069574Ribosomal protein L10. (215 aa)
nop56NOP56 ribonucleoprotein homolog. (565 aa)
LOC105418777Usher syndrome type-1C protein-binding protein 1. (674 aa)
rps16Ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (146 aa)
noc4lNucleolar complex associated 4 homolog. (535 aa)
LOC101066313Exosome component 3. (250 aa)
rpl8Ribosomal protein L8. (276 aa)
rps19Ribosomal protein S19. (200 aa)
LOC101077808Ribonuclease P 21 subunit. (171 aa)
LOC101078882Ribosomal protein, large, P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (147 aa)
rpl9Ribosomal protein L9. (211 aa)
ddx49DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family. (477 aa)
rps740S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (198 aa)
RPS20Ribosomal protein S20. (195 aa)
rpl7l1Ribosomal protein L7-like 1. (258 aa)
rpp38Ribosomal_L7Ae domain-containing protein. (261 aa)
rpl11Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (179 aa)
rpl17Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (184 aa)
rpl15Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
LOC101071986Uncharacterized protein. (421 aa)
ddx47DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family. (483 aa)
rrp7aRibosomal RNA processing 7 homolog A. (281 aa)
rps640S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (249 aa)
rrp36Ribosomal RNA processing 36. (329 aa)
LOC10106830240S ribosomal protein S27. (97 aa)
eri2Exonuclease domain-containing protein. (176 aa)
ebna1bp2EBNA1 binding protein 2. (388 aa)
isg20l2Interferon stimulated exonuclease gene 20-like 2. (325 aa)
LOC101073011Ribonuclease P and MRP subunit p25, b. (228 aa)
riok2RIO kinase 2 (yeast). (527 aa)
rps21Ribosomal protein S21. (161 aa)
CrebzfCREB/ATF bZIP transcription factor. (249 aa)
exosc4Exosome component 4. (245 aa)
wdr12Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (423 aa)
rrp9Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (481 aa)
mtrexMtr4 exosome RNA helicase. (1048 aa)
rpl12Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (168 aa)
rpl1360S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (235 aa)
ngdnNeuroguidin, EIF4E binding protein. (399 aa)
rpl37Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
H2VA08_TAKRURibosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (72 aa)
rrp1bRibosomal RNA processing 1. (746 aa)
H2V3I0_TAKRUAlba domain-containing protein. (211 aa)
Snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (154 aa)
LOC101074802Uncharacterized protein. (128 aa)
rpl6Ribosomal protein L6. (258 aa)
pes1Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (581 aa)
rps9Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (194 aa)
rplp060S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (314 aa)
fcf1FCF1 rRNA-processing protein. (197 aa)
rps3a40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (266 aa)
rpl4Ribosomal protein L4. (369 aa)
utp3UTP3 small subunit processome component. (458 aa)
LOC101067627Methyltransferase like 27. (227 aa)
pdcd11Programmed cell death 11. (1803 aa)
LOC101072761UTP14C small subunit processome component. (722 aa)
rps18Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (144 aa)
rpl14Ribosomal_L14e domain-containing protein. (138 aa)
rbm28RNA binding motif protein 28. (732 aa)
eedPWP2 small subunit processome component. (902 aa)
rexo4REX4 homolog, 3'-5' exonuclease. (430 aa)
gnl3lGuanine nucleotide binding protein-like 3 (nucleolar)-like. (559 aa)
rpp25lRibonuclease P/MRP 25 subunit-like. (193 aa)
exosc10Exosome component 10. (892 aa)
pno1Partner of NOB1 homolog. (248 aa)
RPS29Ribosomal protein S29. (100 aa)
c1dC1D nuclear receptor corepressor. (191 aa)
Rps2640S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (111 aa)
utp6UTP6 small subunit processome component. (594 aa)
RPL19Large subunit ribosomal protein L19e. (204 aa)
wdr46WD repeat domain 46. (635 aa)
rsad1Radical S-adenosyl methionine domain-containing protein; May be a heme chaperone, appears to bind heme. Homologous bacterial proteins do not have oxygen-independent coproporphyrinogen- III oxidase activity. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L- methionine; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (451 aa)
rps27aRibosomal protein S27a. (156 aa)
Rpl39Ribosomal protein L39. (52 aa)
wdr75WD repeat domain 75. (832 aa)
tex10Testis expressed 10. (951 aa)
rcl1RNA terminal phosphate cyclase-like 1. (379 aa)
ENSTRUP00000025250annotation not available (415 aa)
dis3DIS3 exosome endoribonuclease and 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family. (953 aa)
wdr43WD repeat domain 43. (644 aa)
exosc5Exosome component 5. (219 aa)
utp11U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (254 aa)
H2TER7_TAKRURibosomal protein S28. (53 aa)
LOC101074491Matrix metallopeptidase 15a. (396 aa)
byslBystin-like. (435 aa)
exosc7Exosome component 7. (292 aa)
bud23BUD23 rRNA methyltransferase and ribosome maturation factor. (280 aa)
nclNucleolin. (675 aa)
bms1BMS1 ribosome biogenesis factor. (1175 aa)
rpl2260S ribosomal protein L22 isoform X1. (143 aa)
ddx28DEAD (Asp-Glu-Ala-Asp) box polypeptide 28. (539 aa)
LOC101065218Methyltranfer_dom domain-containing protein. (236 aa)
Rps14Ribosomal protein S14. (136 aa)
dcaf13Ddb1 and cul4 associated factor 13. (445 aa)
rpl31Ribosomal protein L31. (127 aa)
rps2Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (279 aa)
LOC101071127Proline, glutamate and leucine rich protein 1. (1242 aa)
dis3l2DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily. (1042 aa)
utp20UTP20 small subunit processome component. (2791 aa)
gnl3Guanine nucleotide binding protein-like 3 (nucleolar). (551 aa)
rpl21Ribosomal protein L21. (160 aa)
nop58NOP58 ribonucleoprotein homolog (yeast). (566 aa)
RPL5-2Ribosomal protein L5. (298 aa)
rps1240S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (191 aa)
LOC101063739RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (515 aa)
tsr1TSR1 ribosome maturation factor. (826 aa)
LOC10106950540S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family. (306 aa)
fblFibrillarin. (326 aa)
krr1KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (377 aa)
exosc9Exosome component 9. (395 aa)
imp4IMP U3 small nucleolar ribonucleoprotein 4. (326 aa)
rpp40Ribonuclease P/MRP 40 subunit. (346 aa)
rpl35aRibosomal protein L35a. (110 aa)
RPL37ARibosomal protein L37a. (78 aa)
rpl22l1Ribosomal protein L22-like 1. (127 aa)
riok1RIO kinase 1 (yeast). (568 aa)
wdr3WD repeat domain 3. (989 aa)
rtcaRNA 3'-terminal phosphate cyclase. (367 aa)
LOC101068606SUMO specific peptidase 3b. (555 aa)
LOC115250384RRNA small subunit pseudouridine methyltransferase Nep1. (237 aa)
exosc8Exosome component 8. (276 aa)
nol11Nucleolar protein 11. (720 aa)
Rps2540S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (85 aa)
RPL5Ribosomal protein L5b. (343 aa)
LOC101077439Glomulin, FKBP associated protein b. (541 aa)
nip760S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
rpl2760S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (162 aa)
rpl3Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (404 aa)
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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