100 items (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rps15	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (155 aa)
	rps10	Ribosomal protein S10. (219 aa)
	RPL3L	Ribosomal protein L3 like. (419 aa)
	rps8	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (219 aa)
	rpl3	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (404 aa)
	LOC101064659	Uncharacterized protein. (1111 aa)
	rpl27	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (162 aa)
	RPL5	Ribosomal protein L5b. (343 aa)
	Rps25	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (85 aa)
	etf1	Eukaryotic translation termination factor 1b. (448 aa)
	rpl22l1	Ribosomal protein L22-like 1. (127 aa)
	RPL37A	Ribosomal protein L37a. (78 aa)
	rpl35a	Ribosomal protein L35a. (110 aa)
	arl6ip1	ADP-ribosylation factor-like 6 interacting protein 1. (203 aa)
	LOC101069505	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family. (306 aa)
	rps12	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (191 aa)
	RPL5-2	Ribosomal protein L5. (298 aa)
	rpl21	Ribosomal protein L21. (160 aa)
	UPF1	Putative regulator of nonsense transcripts 1; RNA-dependent helicase and ATPase required for nonsense- mediated decay (NMD) of mRNAs containing premature stop codons. Is recruited to mRNAs upon translation termination and undergoes a cycle of phosphorylation and dephosphorylation; its phosphorylation appears to be a key step in NMD. The formation of an rent1-rent2-rent3 surveillance complex is believed to activate NMD (By similarity). (1118 aa)
	rps2	Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (279 aa)
	rpl31	Ribosomal protein L31. (127 aa)
	Rps14	Ribosomal protein S14. (136 aa)
	rpl22	60S ribosomal protein L22 isoform X1. (143 aa)
	H2TER7_TAKRU	Ribosomal protein S28. (53 aa)
	Rpl39	Ribosomal protein L39. (52 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	LOC101075802	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (618 aa)
	rsad1	Radical S-adenosyl methionine domain-containing protein; May be a heme chaperone, appears to bind heme. Homologous bacterial proteins do not have oxygen-independent coproporphyrinogen- III oxidase activity. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L- methionine; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (451 aa)
	pabpc1	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (640 aa)
	RPL19	Large subunit ribosomal protein L19e. (204 aa)
	Rps26	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (111 aa)
	RPS29	Ribosomal protein S29. (100 aa)
	rpl14	Ribosomal_L14e domain-containing protein. (138 aa)
	rps18	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (144 aa)
	rsrc1	Arginine/serine-rich coiled-coil 1. (309 aa)
	rpl4	Ribosomal protein L4. (369 aa)
	rps3a	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (266 aa)
	rplp0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (314 aa)
	rps9	Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (194 aa)
	rpl6	Ribosomal protein L6. (258 aa)
	LOC101072838	G1 to S phase transition 1, like. (588 aa)
	LOC101074802	Uncharacterized protein. (128 aa)
	H2VA08_TAKRU	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (72 aa)
	rpl37	Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
	rpl13	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (235 aa)
	rpl12	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (168 aa)
	LOC101073034	NAD(P)-bd_dom domain-containing protein. (219 aa)
	rps21	Ribosomal protein S21. (161 aa)
	LOC101068302	40S ribosomal protein S27. (97 aa)
	rps6	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (249 aa)
	rpl15	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	rpl17	Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (184 aa)
	rpl11	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (179 aa)
	rpl7l1	Ribosomal protein L7-like 1. (258 aa)
	RPS20	Ribosomal protein S20. (195 aa)
	rps7	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (198 aa)
	rpl9	Ribosomal protein L9. (211 aa)
	LOC101078882	Ribosomal protein, large, P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (147 aa)
	rps19	Ribosomal protein S19. (200 aa)
	rpl8	Ribosomal protein L8. (276 aa)
	rps16	Ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (146 aa)
	LOC101069574	Ribosomal protein L10. (215 aa)
	rpl34	Ribosomal protein L34. (117 aa)
	RPS17	Ribosomal protein S17. (135 aa)
	rpl28	Ribosomal protein L28. (137 aa)
	rps3	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (250 aa)
	rpl23	Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (140 aa)
	LOC101071215	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (643 aa)
	rpl23a	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (181 aa)
	rps11	Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (187 aa)
	rpl18	Ribosomal protein L18. (223 aa)
	LOC101061501	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (242 aa)
	Aknad1	Protein AKNAD1 isoform X1. (1200 aa)
	Rpl29	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (137 aa)
	kxd1	KxDL motif containing 1. (194 aa)
	ENSTRUP00000070071	annotation not available (74 aa)
	rpl30	Ribosomal protein L30. (116 aa)
	rps4x	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (263 aa)
	rpl32	Ribosomal protein L32. (140 aa)
	NCBP1	Nuclear cap binding protein subunit 1. (839 aa)
	rpl13a	Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (228 aa)
	rnpepl1	Arginyl aminopeptidase like 1. (768 aa)
	LOC101067942	Ribosomal protein L26. (145 aa)
	RPL7A	60S ribosomal protein L7a; Belongs to the eukaryotic ribosomal protein eL8 family. (242 aa)
	ENSTRUP00000075405	annotation not available (108 aa)
	rpl35	Ribosomal protein L35. (135 aa)
	ncbp2	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (173 aa)
	LOC101069523	40S ribosomal protein S20. (127 aa)
	rpl36	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (151 aa)
	LOC101077558	40S ribosomal protein S27. (91 aa)
	Rps23	Small subunit ribosomal protein S23e. (154 aa)
	rpl36a	60S ribosomal protein L36a. (156 aa)
	ENSTRUP00000079751	annotation not available (219 aa)
	rplp2	Ribosomal protein, large P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (140 aa)
	LOC101068736	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (211 aa)
	rps24	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (132 aa)
	rps15a	Ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	rpl24	Ribosomal protein L24. (223 aa)
	rpl7	Ribosomal protein L7. (247 aa)
	RPL27A	Ribosomal protein L27a. (147 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Aknad1	ENSTRUP00000070071	ENSTRUP00000068952	ENSTRUP00000070071	Protein AKNAD1 isoform X1.	annotation not available	0.986
Aknad1	ENSTRUP00000075405	ENSTRUP00000068952	ENSTRUP00000075405	Protein AKNAD1 isoform X1.	annotation not available	0.898
Aknad1	ENSTRUP00000079751	ENSTRUP00000068952	ENSTRUP00000079751	Protein AKNAD1 isoform X1.	annotation not available	0.863
Aknad1	H2TER7_TAKRU	ENSTRUP00000068952	ENSTRUP00000023160	Protein AKNAD1 isoform X1.	Ribosomal protein S28.	0.990
Aknad1	H2VA08_TAKRU	ENSTRUP00000068952	ENSTRUP00000046048	Protein AKNAD1 isoform X1.	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	0.992
Aknad1	LOC101061501	ENSTRUP00000068952	ENSTRUP00000068569	Protein AKNAD1 isoform X1.	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	0.863
Aknad1	LOC101067942	ENSTRUP00000068952	ENSTRUP00000074869	Protein AKNAD1 isoform X1.	Ribosomal protein L26.	0.995
Aknad1	LOC101068302	ENSTRUP00000068952	ENSTRUP00000052838	Protein AKNAD1 isoform X1.	40S ribosomal protein S27.	0.898
Aknad1	LOC101068736	ENSTRUP00000068952	ENSTRUP00000082048	Protein AKNAD1 isoform X1.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.967
Aknad1	LOC101069505	ENSTRUP00000068952	ENSTRUP00000010856	Protein AKNAD1 isoform X1.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family.	0.966
Aknad1	LOC101069523	ENSTRUP00000068952	ENSTRUP00000076506	Protein AKNAD1 isoform X1.	40S ribosomal protein S20.	0.944
Aknad1	LOC101069574	ENSTRUP00000068952	ENSTRUP00000063040	Protein AKNAD1 isoform X1.	Ribosomal protein L10.	0.961
Aknad1	LOC101072838	ENSTRUP00000068952	ENSTRUP00000086369	Protein AKNAD1 isoform X1.	G1 to S phase transition 1, like.	0.437
Aknad1	LOC101073034	ENSTRUP00000068952	ENSTRUP00000050738	Protein AKNAD1 isoform X1.	NAD(P)-bd_dom domain-containing protein.	0.767
Aknad1	LOC101074802	ENSTRUP00000068952	ENSTRUP00000042490	Protein AKNAD1 isoform X1.	Uncharacterized protein.	0.767
Aknad1	LOC101077558	ENSTRUP00000068952	ENSTRUP00000077356	Protein AKNAD1 isoform X1.	40S ribosomal protein S27.	0.898
Aknad1	LOC101078882	ENSTRUP00000068952	ENSTRUP00000057776	Protein AKNAD1 isoform X1.	Ribosomal protein, large, P1; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.991
Aknad1	RPL19	ENSTRUP00000068952	ENSTRUP00000029939	Protein AKNAD1 isoform X1.	Large subunit ribosomal protein L19e.	0.967
Aknad1	RPL27A	ENSTRUP00000068952	ENSTRUP00000084700	Protein AKNAD1 isoform X1.	Ribosomal protein L27a.	0.991
Aknad1	RPL37A	ENSTRUP00000068952	ENSTRUP00000008111	Protein AKNAD1 isoform X1.	Ribosomal protein L37a.	0.989