(13 nodes) Fringe-like network (Takifugu rubripes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	b3galt4	Hexosyltransferase. (335 aa)
	LOC101066309	Beta-1,3-N-acetylglucosaminyltransferase. (391 aa)
	LOC101067076	Hexosyltransferase. (393 aa)
	B3GNT8	Hexosyltransferase. (473 aa)
	lfng	Beta-1,3-N-acetylglucosaminyltransferase. (369 aa)
	ENSTRUP00000047924	Hexosyltransferase. (214 aa)
	b3gnt7	Hexosyltransferase. (416 aa)
	LOC101073848	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase. (330 aa)
	ENSTRUP00000058931	Beta 3-glucosyltransferase b. (456 aa)
	LOC101071310	Beta 3-glucosyltransferase b. (470 aa)
	LOC101079148	Beta 3-glucosyltransferase a. (470 aa)
	LOC101076228	Hexosyltransferase. (657 aa)
	LOC101073166	Uncharacterized protein. (383 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101066309	LOC101076228	ENSTRUP00000010872	ENSTRUP00000072294	Beta-1,3-N-acetylglucosaminyltransferase.	Hexosyltransferase.	0.440
LOC101066309	b3gnt7	ENSTRUP00000010872	ENSTRUP00000053979	Beta-1,3-N-acetylglucosaminyltransferase.	Hexosyltransferase.	0.413
LOC101076228	LOC101066309	ENSTRUP00000072294	ENSTRUP00000010872	Hexosyltransferase.	Beta-1,3-N-acetylglucosaminyltransferase.	0.440
LOC101076228	lfng	ENSTRUP00000072294	ENSTRUP00000036075	Hexosyltransferase.	Beta-1,3-N-acetylglucosaminyltransferase.	0.413
b3gnt7	LOC101066309	ENSTRUP00000053979	ENSTRUP00000010872	Hexosyltransferase.	Beta-1,3-N-acetylglucosaminyltransferase.	0.413
b3gnt7	lfng	ENSTRUP00000053979	ENSTRUP00000036075	Hexosyltransferase.	Beta-1,3-N-acetylglucosaminyltransferase.	0.413
lfng	LOC101076228	ENSTRUP00000036075	ENSTRUP00000072294	Beta-1,3-N-acetylglucosaminyltransferase.	Hexosyltransferase.	0.413
lfng	b3gnt7	ENSTRUP00000036075	ENSTRUP00000053979	Beta-1,3-N-acetylglucosaminyltransferase.	Hexosyltransferase.	0.413