(10 nodes) Zinc-binding dehydrogenase network (Takifugu rubripes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mecr	Mitochondrial trans-2-enoyl-CoA reductase. (378 aa)
	ptgr1	Prostaglandin reductase 1. (330 aa)
	TP53I3	Tumor protein p53 inducible protein 3. (362 aa)
	VAT1	Vesicle amine transport 1. (438 aa)
	ptgr2	Prostaglandin reductase 2. (351 aa)
	LOC101076262	Vesicle amine transport 1. (479 aa)
	vat1l	Vesicle amine transport 1-like. (414 aa)
	LOC101077727	PKS_ER domain-containing protein. (430 aa)
	ZADH2	Zinc binding alcohol dehydrogenase domain containing 2. (404 aa)
	rtn4ip1	Reticulon 4 interacting protein 1. (413 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101076262	mecr	ENSTRUP00000041919	ENSTRUP00000065392	Vesicle amine transport 1.	Mitochondrial trans-2-enoyl-CoA reductase.	0.451
LOC101077727	ZADH2	ENSTRUP00000056622	ENSTRUP00000086076	PKS_ER domain-containing protein.	Zinc binding alcohol dehydrogenase domain containing 2.	0.444
LOC101077727	mecr	ENSTRUP00000056622	ENSTRUP00000065392	PKS_ER domain-containing protein.	Mitochondrial trans-2-enoyl-CoA reductase.	0.555
TP53I3	ptgr1	ENSTRUP00000014696	ENSTRUP00000010004	Tumor protein p53 inducible protein 3.	Prostaglandin reductase 1.	0.401
VAT1	mecr	ENSTRUP00000023549	ENSTRUP00000065392	Vesicle amine transport 1.	Mitochondrial trans-2-enoyl-CoA reductase.	0.453
ZADH2	LOC101077727	ENSTRUP00000086076	ENSTRUP00000056622	Zinc binding alcohol dehydrogenase domain containing 2.	PKS_ER domain-containing protein.	0.444
ZADH2	mecr	ENSTRUP00000086076	ENSTRUP00000065392	Zinc binding alcohol dehydrogenase domain containing 2.	Mitochondrial trans-2-enoyl-CoA reductase.	0.400
ZADH2	rtn4ip1	ENSTRUP00000086076	ENSTRUP00000008844	Zinc binding alcohol dehydrogenase domain containing 2.	Reticulon 4 interacting protein 1.	0.439
mecr	LOC101076262	ENSTRUP00000065392	ENSTRUP00000041919	Mitochondrial trans-2-enoyl-CoA reductase.	Vesicle amine transport 1.	0.451
mecr	LOC101077727	ENSTRUP00000065392	ENSTRUP00000056622	Mitochondrial trans-2-enoyl-CoA reductase.	PKS_ER domain-containing protein.	0.555
mecr	VAT1	ENSTRUP00000065392	ENSTRUP00000023549	Mitochondrial trans-2-enoyl-CoA reductase.	Vesicle amine transport 1.	0.453
mecr	ZADH2	ENSTRUP00000065392	ENSTRUP00000086076	Mitochondrial trans-2-enoyl-CoA reductase.	Zinc binding alcohol dehydrogenase domain containing 2.	0.400
mecr	rtn4ip1	ENSTRUP00000065392	ENSTRUP00000008844	Mitochondrial trans-2-enoyl-CoA reductase.	Reticulon 4 interacting protein 1.	0.543
ptgr1	TP53I3	ENSTRUP00000010004	ENSTRUP00000014696	Prostaglandin reductase 1.	Tumor protein p53 inducible protein 3.	0.401
rtn4ip1	ZADH2	ENSTRUP00000008844	ENSTRUP00000086076	Reticulon 4 interacting protein 1.	Zinc binding alcohol dehydrogenase domain containing 2.	0.439
rtn4ip1	mecr	ENSTRUP00000008844	ENSTRUP00000065392	Reticulon 4 interacting protein 1.	Mitochondrial trans-2-enoyl-CoA reductase.	0.543
rtn4ip1	vat1l	ENSTRUP00000008844	ENSTRUP00000044881	Reticulon 4 interacting protein 1.	Vesicle amine transport 1-like.	0.430
vat1l	rtn4ip1	ENSTRUP00000044881	ENSTRUP00000008844	Vesicle amine transport 1-like.	Reticulon 4 interacting protein 1.	0.430