8 items (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSTRUP00000058317	Polyubiquitin-like. (110 aa)
	il10	Interleukin 10. (227 aa)
	il-18	Takifugu rubripes interleukin-18 (il-18), mRNA. (185 aa)
	nck1	Cytoplasmic protein. (399 aa)
	nck2	Cytoplasmic protein. (396 aa)
	Il-18	Interleukin-18. (185 aa)
	LOC101064437	IFI56. (428 aa)
	LOC101071639	Interferon regulatory factor 3. (465 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000058317	LOC101064437	ENSTRUP00000058317	ENSTRUP00000002981	Polyubiquitin-like.	IFI56.	0.578
ENSTRUP00000058317	LOC101071639	ENSTRUP00000058317	ENSTRUP00000030448	Polyubiquitin-like.	Interferon regulatory factor 3.	0.707
Il-18	il10	ENSTRUP00000031535	ENSTRUP00000054385	Interleukin-18.	Interleukin 10.	0.758
LOC101064437	ENSTRUP00000058317	ENSTRUP00000002981	ENSTRUP00000058317	IFI56.	Polyubiquitin-like.	0.578
LOC101071639	ENSTRUP00000058317	ENSTRUP00000030448	ENSTRUP00000058317	Interferon regulatory factor 3.	Polyubiquitin-like.	0.707
LOC101071639	il10	ENSTRUP00000030448	ENSTRUP00000054385	Interferon regulatory factor 3.	Interleukin 10.	0.419
il-18	il10	ENSTRUP00000049434	ENSTRUP00000054385	Takifugu rubripes interleukin-18 (il-18), mRNA.	Interleukin 10.	0.758
il10	Il-18	ENSTRUP00000054385	ENSTRUP00000031535	Interleukin 10.	Interleukin-18.	0.758
il10	LOC101071639	ENSTRUP00000054385	ENSTRUP00000030448	Interleukin 10.	Interferon regulatory factor 3.	0.419
il10	il-18	ENSTRUP00000054385	ENSTRUP00000049434	Interleukin 10.	Takifugu rubripes interleukin-18 (il-18), mRNA.	0.758
nck1	nck2	ENSTRUP00000045455	ENSTRUP00000034543	Cytoplasmic protein.	Cytoplasmic protein.	0.902
nck2	nck1	ENSTRUP00000034543	ENSTRUP00000045455	Cytoplasmic protein.	Cytoplasmic protein.	0.902