(27 nodes) (2018) A draft genome of the striped catfish, Pangasianodon hypophthalmus, for comparative analysis of genes relevant to development and a resource for aquaculture improvement. network (Takifugu rubripes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC619285	Rhodopsin. (352 aa)
	spata17	Uncharacterized protein. (280 aa)
	LOC101070735	Homeobox protein Hox-D4b; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family. Deformed subfamily. (249 aa)
	LOC101073398	Uncharacterized protein. (265 aa)
	tdrd1	Tudor domain containing 1. (1295 aa)
	hoxd9b	Homeobox protein Hox-D9b; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Abd-B homeobox family. (301 aa)
	LOC101063427	Tyrosine-protein kinase receptor. (1426 aa)
	LOC115247245	Insulin-like growth factor-binding protein 3. (435 aa)
	H2RPZ6_TAKRU	Insulin-like growth factor binding protein 3. (274 aa)
	LOC101079163	Rhodopsin. (349 aa)
	hoxd11b	Homeobox protein Hox-D11b; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Abd-B homeobox family. (158 aa)
	hsd17b3	Hydroxysteroid (17-beta) dehydrogenase 3. (308 aa)
	LOC101067689	Insulin-like growth factor binding protein 5a. (300 aa)
	LOC101068984	Homeobox protein Hox-A10a; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Abd-B homeobox family. (379 aa)
	LOC101068014	Homeobox protein Hox-A2a; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family. Proboscipedia subfamily. (363 aa)
	dmrt3	Doublesex- and mab-3-related transcription factor 3; Probable transcription factor that plays a role in configuring the spinal circuits controlling motion in vertebrates. Involved in neuronal specification within specific subdivision of spinal cord neurons and in the development of a coordinated locomotor network controlling movements. May regulate transcription (By similarity); Belongs to the DMRT family. (535 aa)
	dmrt2	DM domain-containing transcription factor DMRT2. (513 aa)
	LOC101079603	Tyrosine-protein kinase receptor. (1416 aa)
	igfbp2	Insulin-like growth factor binding protein 2a. (293 aa)
	IGFBP3	Insulin like growth factor binding protein 3. (288 aa)
	igfbp1	IGFBP N-terminal domain-containing protein. (315 aa)
	MITF	Melanocyte inducing transcription factor b. (604 aa)
	rho	Rhodopsin. (353 aa)
	LOC101064892	SRY-box transcription factor 9b. (484 aa)
	LOC115248429	Insulin-like growth factor binding protein 7. (266 aa)
	c8b	Complement component 8, beta polypeptide. (591 aa)
	LOC778011	Rhodopsin. (353 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2RPZ6_TAKRU	IGFBP3	ENSTRUP00000061329	ENSTRUP00000033272	Insulin-like growth factor binding protein 3.	Insulin like growth factor binding protein 3.	0.902
H2RPZ6_TAKRU	LOC115247245	ENSTRUP00000061329	ENSTRUP00000064884	Insulin-like growth factor binding protein 3.	Insulin-like growth factor-binding protein 3.	0.900
IGFBP3	H2RPZ6_TAKRU	ENSTRUP00000033272	ENSTRUP00000061329	Insulin like growth factor binding protein 3.	Insulin-like growth factor binding protein 3.	0.902
IGFBP3	LOC101067689	ENSTRUP00000033272	ENSTRUP00000048480	Insulin like growth factor binding protein 3.	Insulin-like growth factor binding protein 5a.	0.402
IGFBP3	LOC115247245	ENSTRUP00000033272	ENSTRUP00000064884	Insulin like growth factor binding protein 3.	Insulin-like growth factor-binding protein 3.	0.901
IGFBP3	igfbp1	ENSTRUP00000033272	ENSTRUP00000033075	Insulin like growth factor binding protein 3.	IGFBP N-terminal domain-containing protein.	0.462
IGFBP3	igfbp2	ENSTRUP00000033272	ENSTRUP00000034995	Insulin like growth factor binding protein 3.	Insulin-like growth factor binding protein 2a.	0.428
LOC101063427	LOC101079603	ENSTRUP00000066115	ENSTRUP00000039548	Tyrosine-protein kinase receptor.	Tyrosine-protein kinase receptor.	0.902
LOC101064892	dmrt2	ENSTRUP00000024494	ENSTRUP00000040043	SRY-box transcription factor 9b.	DM domain-containing transcription factor DMRT2.	0.498
LOC101064892	dmrt3	ENSTRUP00000024494	ENSTRUP00000040103	SRY-box transcription factor 9b.	Doublesex- and mab-3-related transcription factor 3; Probable transcription factor that plays a role in configuring the spinal circuits controlling motion in vertebrates. Involved in neuronal specification within specific subdivision of spinal cord neurons and in the development of a coordinated locomotor network controlling movements. May regulate transcription (By similarity); Belongs to the DMRT family.	0.492
LOC101067689	IGFBP3	ENSTRUP00000048480	ENSTRUP00000033272	Insulin-like growth factor binding protein 5a.	Insulin like growth factor binding protein 3.	0.402
LOC101067689	LOC115247245	ENSTRUP00000048480	ENSTRUP00000064884	Insulin-like growth factor binding protein 5a.	Insulin-like growth factor-binding protein 3.	0.420
LOC101067689	LOC115248429	ENSTRUP00000048480	ENSTRUP00000021334	Insulin-like growth factor binding protein 5a.	Insulin-like growth factor binding protein 7.	0.457
LOC101070735	hoxd9b	ENSTRUP00000081559	ENSTRUP00000069664	Homeobox protein Hox-D4b; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family. Deformed subfamily.	Homeobox protein Hox-D9b; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Abd-B homeobox family.	0.465
LOC101073398	MITF	ENSTRUP00000080999	ENSTRUP00000030562	Uncharacterized protein.	Melanocyte inducing transcription factor b.	0.539
LOC101079603	LOC101063427	ENSTRUP00000039548	ENSTRUP00000066115	Tyrosine-protein kinase receptor.	Tyrosine-protein kinase receptor.	0.902
LOC115247245	H2RPZ6_TAKRU	ENSTRUP00000064884	ENSTRUP00000061329	Insulin-like growth factor-binding protein 3.	Insulin-like growth factor binding protein 3.	0.900
LOC115247245	IGFBP3	ENSTRUP00000064884	ENSTRUP00000033272	Insulin-like growth factor-binding protein 3.	Insulin like growth factor binding protein 3.	0.901
LOC115247245	LOC101067689	ENSTRUP00000064884	ENSTRUP00000048480	Insulin-like growth factor-binding protein 3.	Insulin-like growth factor binding protein 5a.	0.420
LOC115247245	igfbp1	ENSTRUP00000064884	ENSTRUP00000033075	Insulin-like growth factor-binding protein 3.	IGFBP N-terminal domain-containing protein.	0.466