STRINGSTRING
rps11 rps11 dlx5 dlx5 shh shh bmp4 bmp4 tnfsf13b tnfsf13b LOC101077059 LOC101077059 fgfr1 fgfr1 col1a2 col1a2 sp7 sp7 rps18 rps18 tbp tbp gapdh gapdh runx2 runx2 mmp9 mmp9 LOC101066261 LOC101066261 edar edar lef1 lef1 gapdh-2 gapdh-2 SEMA4D SEMA4D
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rps11Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (187 aa)
dlx5Homeobox domain-containing protein. (285 aa)
shhHedgehog protein; Intercellular signal essential for a variety of patterning events during development. (413 aa)
bmp4Bone morphogenetic protein 4. (459 aa)
tnfsf13bTNF superfamily member 13b; Belongs to the tumor necrosis factor family. (262 aa)
LOC101077059Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family. (327 aa)
fgfr1Fibroblast growth factor receptor. (845 aa)
col1a2Collagen, type I, alpha 2. (1269 aa)
sp7Sp7 transcription factor. (459 aa)
rps18Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (144 aa)
tbpTATA box binding protein. (301 aa)
gapdhGlyceraldehyde-3-phosphate dehydrogenase. (333 aa)
runx2Runt-related transcription factor. (463 aa)
mmp9Uncharacterized protein. (631 aa)
LOC101066261Cathepsin K; Belongs to the peptidase C1 family. (331 aa)
edarEctodysplasin A receptor. (515 aa)
lef1Lymphoid enhancer-binding factor 1. (377 aa)
gapdh-2Glyceraldehyde-3-phosphate dehydrogenase. (333 aa)
SEMA4DSemaphorin 4D; Belongs to the semaphorin family. (919 aa)
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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