(43 nodes) PAS domain network (Takifugu rubripes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101077956	SIM bHLH transcription factor 1. (760 aa)
	ARNTL2	Aryl hydrocarbon receptor nuclear translocator like 2. (605 aa)
	LOC101078561	Period circadian clock 3. (1258 aa)
	ENSTRUP00000008792	annotation not available (563 aa)
	kcnh8	Potassium voltage-gated channel, subfamily H (eag-related), member 8. (1029 aa)
	ncoa1	Nuclear receptor coactivator 1. (1370 aa)
	PER2	Period circadian regulator 2. (1502 aa)
	LOC101065207	Aryl hydrocarbon receptor nuclear translocator-like 2. (640 aa)
	arntl	Aryl hydrocarbon receptor nuclear translocator-like 1a. (608 aa)
	ahr2a	Uncharacterized protein. (929 aa)
	LOC101077966	Nuclear receptor coactivator 3. (1526 aa)
	hif1a	Hypoxia inducible factor 1 subunit alpha a. (763 aa)
	npas1	Neuronal PAS domain protein 1. (456 aa)
	LOC101065307	Neuronal PAS domain protein 2. (893 aa)
	per1	Period circadian clock 1b. (1416 aa)
	CLOCK	Clock circadian regulator a. (860 aa)
	kcnh4	Potassium voltage-gated channel, subfamily H (eag-related), member 4a. (1124 aa)
	pde8a	Phosphodiesterase. (817 aa)
	ahr2c	Uncharacterized protein. (818 aa)
	arnt2	Aryl-hydrocarbon receptor nuclear translocator 2. (717 aa)
	ahr2b	PAS domain-containing protein. (980 aa)
	LOC101067536	Endothelial PAS domain protein 1b. (858 aa)
	NPAS3	Neuronal PAS domain protein 3. (1043 aa)
	ENSTRUP00000063599	Uncharacterized protein. (1317 aa)
	LOC101073418	Aryl hydrocarbon receptor nuclear translocator. (868 aa)
	ahr1b	Aryl hydrocarbon receptor 1B. (854 aa)
	LOC101061913	Period circadian clock 2. (1523 aa)
	KCNH7	Potassium voltage-gated channel subfamily H member 7. (1068 aa)
	ENSTRUP00000069008	Nuclear receptor coactivator 1-like. (1244 aa)
	LOC101066852	Uncharacterized protein. (558 aa)
	pde8b	Phosphodiesterase. (865 aa)
	kcnh6	Potassium voltage-gated channel, subfamily H (eag-related), member 6a. (1212 aa)
	ahr1a	Uncharacterized protein. (975 aa)
	LOC101078879	Clock circadian regulator b. (837 aa)
	LOC101064944	Uncharacterized protein. (1498 aa)
	LOC101062698	Hypoxia inducible factor 1 subunit alpha, like. (707 aa)
	ahrr	Uncharacterized protein. (691 aa)
	npas4	BHLH domain-containing protein. (931 aa)
	ncoa2	Nuclear receptor coactivator 2. (1518 aa)
	ENSTRUP00000083569	annotation not available (686 aa)
	SIM1	SIM bHLH transcription factor 1. (565 aa)
	LOC115249652	Neuronal PAS domain-containing protein 4-like. (803 aa)
	LOC101068454	Uncharacterized protein. (1565 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARNTL2	CLOCK	ENSTRUP00000006975	ENSTRUP00000039610	Aryl hydrocarbon receptor nuclear translocator like 2.	Clock circadian regulator a.	0.824
ARNTL2	ENSTRUP00000008792	ENSTRUP00000006975	ENSTRUP00000008792	Aryl hydrocarbon receptor nuclear translocator like 2.	annotation not available	0.536
ARNTL2	ENSTRUP00000063599	ENSTRUP00000006975	ENSTRUP00000063599	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.635
ARNTL2	ENSTRUP00000083569	ENSTRUP00000006975	ENSTRUP00000083569	Aryl hydrocarbon receptor nuclear translocator like 2.	annotation not available	0.536
ARNTL2	LOC101061913	ENSTRUP00000006975	ENSTRUP00000066372	Aryl hydrocarbon receptor nuclear translocator like 2.	Period circadian clock 2.	0.635
ARNTL2	LOC101062698	ENSTRUP00000006975	ENSTRUP00000079457	Aryl hydrocarbon receptor nuclear translocator like 2.	Hypoxia inducible factor 1 subunit alpha, like.	0.546
ARNTL2	LOC101065307	ENSTRUP00000006975	ENSTRUP00000033767	Aryl hydrocarbon receptor nuclear translocator like 2.	Neuronal PAS domain protein 2.	0.825
ARNTL2	LOC101067536	ENSTRUP00000006975	ENSTRUP00000060918	Aryl hydrocarbon receptor nuclear translocator like 2.	Endothelial PAS domain protein 1b.	0.546
ARNTL2	LOC101077956	ENSTRUP00000006975	ENSTRUP00000046748	Aryl hydrocarbon receptor nuclear translocator like 2.	SIM bHLH transcription factor 1.	0.479
ARNTL2	LOC101078561	ENSTRUP00000006975	ENSTRUP00000007540	Aryl hydrocarbon receptor nuclear translocator like 2.	Period circadian clock 3.	0.635
ARNTL2	LOC101078879	ENSTRUP00000006975	ENSTRUP00000076993	Aryl hydrocarbon receptor nuclear translocator like 2.	Clock circadian regulator b.	0.793
ARNTL2	LOC115249652	ENSTRUP00000006975	ENSTRUP00000084130	Aryl hydrocarbon receptor nuclear translocator like 2.	Neuronal PAS domain-containing protein 4-like.	0.756
ARNTL2	NPAS3	ENSTRUP00000006975	ENSTRUP00000062125	Aryl hydrocarbon receptor nuclear translocator like 2.	Neuronal PAS domain protein 3.	0.587
ARNTL2	PER2	ENSTRUP00000006975	ENSTRUP00000016743	Aryl hydrocarbon receptor nuclear translocator like 2.	Period circadian regulator 2.	0.635
ARNTL2	SIM1	ENSTRUP00000006975	ENSTRUP00000083993	Aryl hydrocarbon receptor nuclear translocator like 2.	SIM bHLH transcription factor 1.	0.439
ARNTL2	ahr1a	ENSTRUP00000006975	ENSTRUP00000076089	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.536
ARNTL2	ahr1b	ENSTRUP00000006975	ENSTRUP00000065688	Aryl hydrocarbon receptor nuclear translocator like 2.	Aryl hydrocarbon receptor 1B.	0.536
ARNTL2	ahr2a	ENSTRUP00000006975	ENSTRUP00000023397	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.536
ARNTL2	ahr2b	ENSTRUP00000006975	ENSTRUP00000059510	Aryl hydrocarbon receptor nuclear translocator like 2.	PAS domain-containing protein.	0.536
ARNTL2	ahr2c	ENSTRUP00000006975	ENSTRUP00000047268	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.536