(49 nodes) Laminin G domain network (Takifugu rubripes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pros1	Protein S. (676 aa)
	crb1	Crumbs cell polarity complex component 1. (1320 aa)
	col11a1	Collagen, type XI, alpha 1a. (1582 aa)
	crb2	Crumbs cell polarity complex component 2b. (1419 aa)
	fat1	FAT atypical cadherin 1a. (4660 aa)
	H2SCJ2_TAKRU	Si:ch211-186j3.6; Cadherins are calcium-dependent cell adhesion proteins. (2800 aa)
	ENSTRUP00000013010	annotation not available (1049 aa)
	LOC101061888	Slit homolog 1b (Drosophila). (1558 aa)
	EGFLAM	EGF like, fibronectin type III and laminin G domains. (951 aa)
	hspg2	Heparan sulfate proteoglycan 2. (3494 aa)
	slit1	Slit homolog 1a (Drosophila). (1546 aa)
	FAT4	FAT atypical cadherin 4. (4962 aa)
	LOC101078917	Uncharacterized protein. (1670 aa)
	shbg	Sex hormone-binding globulin. (392 aa)
	LOC101071431	Uncharacterized protein. (1428 aa)
	tspear	Thrombospondin-type laminin G domain and EAR repeat-containing protein. (716 aa)
	cntnap1	Contactin associated protein 1. (1308 aa)
	LOC101078252	Slit homolog 3 (Drosophila). (1532 aa)
	LOC101065472	Si:dkey-193c22.2. (2356 aa)
	LOC101065004	Neurexin 2. (1665 aa)
	H2UTY6_TAKRU	Uncharacterized protein. (2735 aa)
	LOC101077138	Uncharacterized protein. (1053 aa)
	LOC101066829	Uncharacterized protein. (1310 aa)
	ENSTRUP00000058211	Fibrillar collagen NC1 domain-containing protein. (1178 aa)
	ENSTRUP00000063999	Uncharacterized protein. (1303 aa)
	EGFLAM-2	EGF like, fibronectin type III and laminin G domains. (992 aa)
	LOC101079510	Procollagen, type V, alpha 1. (2030 aa)
	gas6	Growth arrest-specific 6. (655 aa)
	LOC101062914	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (2914 aa)
	LAMA3	Uncharacterized protein. (2386 aa)
	cspg4	Chondroitin sulfate proteoglycan 4. (2329 aa)
	Fat2	Uncharacterized protein. (4245 aa)
	NELL1	Neural EGFL like 1. (820 aa)
	LOC101063165	Uncharacterized protein. (1300 aa)
	LOC101064453	Contactin associated protein-like 5a. (1386 aa)
	H2RTH0_TAKRU	Uncharacterized protein. (1303 aa)
	nrxn1	Neurexin 1b. (1505 aa)
	LOC101079387	Neurexin 3b. (1712 aa)
	LOC101067962	Contactin associated protein like 2b. (1315 aa)
	nell2	Neural EGFL like 2a. (825 aa)
	nrxn3	Uncharacterized protein. (1660 aa)
	LOC101071648	Uncharacterized protein. (1314 aa)
	celsr3	Cadherin EGF LAG seven-pass G-type receptor 3 isoform X1. (3909 aa)
	fat3	FAT atypical cadherin 3a. (4647 aa)
	celsr2	Cadherin, EGF LAG seven-pass G-type receptor 2; Belongs to the G-protein coupled receptor 2 family. (2994 aa)
	agrn	Agrin. (2110 aa)
	celsr1	Cadherin EGF LAG seven-pass G-type receptor 1a; Belongs to the G-protein coupled receptor 2 family. (3074 aa)
	CNTNAP2	Contactin associated protein like 2. (1392 aa)
	ENSTRUP00000088443	Collagen alpha-1(XI) chain-like isoform X1. (248 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNTNAP2	LOC101067962	ENSTRUP00000088105	ENSTRUP00000080071	Contactin associated protein like 2.	Contactin associated protein like 2b.	0.901
EGFLAM	LOC101065472	ENSTRUP00000015920	ENSTRUP00000042648	EGF like, fibronectin type III and laminin G domains.	Si:dkey-193c22.2.	0.403
EGFLAM	cspg4	ENSTRUP00000015920	ENSTRUP00000068659	EGF like, fibronectin type III and laminin G domains.	Chondroitin sulfate proteoglycan 4.	0.403
EGFLAM-2	LOC101065472	ENSTRUP00000064179	ENSTRUP00000042648	EGF like, fibronectin type III and laminin G domains.	Si:dkey-193c22.2.	0.403
EGFLAM-2	cspg4	ENSTRUP00000064179	ENSTRUP00000068659	EGF like, fibronectin type III and laminin G domains.	Chondroitin sulfate proteoglycan 4.	0.403
FAT4	Fat2	ENSTRUP00000023522	ENSTRUP00000070258	FAT atypical cadherin 4.	Uncharacterized protein.	0.418
FAT4	fat1	ENSTRUP00000023522	ENSTRUP00000005598	FAT atypical cadherin 4.	FAT atypical cadherin 1a.	0.452
Fat2	FAT4	ENSTRUP00000070258	ENSTRUP00000023522	Uncharacterized protein.	FAT atypical cadherin 4.	0.418
LOC101065472	EGFLAM	ENSTRUP00000042648	ENSTRUP00000015920	Si:dkey-193c22.2.	EGF like, fibronectin type III and laminin G domains.	0.403
LOC101065472	EGFLAM-2	ENSTRUP00000042648	ENSTRUP00000064179	Si:dkey-193c22.2.	EGF like, fibronectin type III and laminin G domains.	0.403
LOC101065472	agrn	ENSTRUP00000042648	ENSTRUP00000083326	Si:dkey-193c22.2.	Agrin.	0.444
LOC101065472	hspg2	ENSTRUP00000042648	ENSTRUP00000021103	Si:dkey-193c22.2.	Heparan sulfate proteoglycan 2.	0.450
LOC101067962	CNTNAP2	ENSTRUP00000080071	ENSTRUP00000088105	Contactin associated protein like 2b.	Contactin associated protein like 2.	0.901
agrn	LOC101065472	ENSTRUP00000083326	ENSTRUP00000042648	Agrin.	Si:dkey-193c22.2.	0.444
agrn	cspg4	ENSTRUP00000083326	ENSTRUP00000068659	Agrin.	Chondroitin sulfate proteoglycan 4.	0.444
agrn	hspg2	ENSTRUP00000083326	ENSTRUP00000021103	Agrin.	Heparan sulfate proteoglycan 2.	0.687
celsr2	celsr3	ENSTRUP00000082930	ENSTRUP00000081079	Cadherin, EGF LAG seven-pass G-type receptor 2; Belongs to the G-protein coupled receptor 2 family.	Cadherin EGF LAG seven-pass G-type receptor 3 isoform X1.	0.496
celsr3	celsr2	ENSTRUP00000081079	ENSTRUP00000082930	Cadherin EGF LAG seven-pass G-type receptor 3 isoform X1.	Cadherin, EGF LAG seven-pass G-type receptor 2; Belongs to the G-protein coupled receptor 2 family.	0.496
cspg4	EGFLAM	ENSTRUP00000068659	ENSTRUP00000015920	Chondroitin sulfate proteoglycan 4.	EGF like, fibronectin type III and laminin G domains.	0.403
cspg4	EGFLAM-2	ENSTRUP00000068659	ENSTRUP00000064179	Chondroitin sulfate proteoglycan 4.	EGF like, fibronectin type III and laminin G domains.	0.403