50 items (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101079950	Uncharacterized protein. (204 aa)
	LOC101072330	Plexin b2b. (1849 aa)
	LOC101076911	Semaphorin 4e; Belongs to the semaphorin family. (730 aa)
	LOC101068409	Plexin b2a. (1556 aa)
	plxdc2	Plexin domain containing 2. (528 aa)
	LOC101071528	Macrophage stimulating 1 receptor a. (1375 aa)
	PLXND1	Plexin D1. (1802 aa)
	LOC101063126	Semaphorin 4G; Belongs to the semaphorin family. (888 aa)
	plxna3	Plexin A3. (1910 aa)
	sema7a	Semaphorin 7A; Belongs to the semaphorin family. (684 aa)
	mst1r	Macrophage stimulating 1 receptor b. (1374 aa)
	LOC101071870	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ga; Belongs to the semaphorin family. (744 aa)
	LOC101064427	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family. (845 aa)
	LOC101070417	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3H; Belongs to the semaphorin family. (767 aa)
	LOC101071388	Si:ch211-129c21.1; Belongs to the semaphorin family. (803 aa)
	sema5b	Sema domain-containing protein. (1105 aa)
	PLXDC1	Plexin domain containing 1. (489 aa)
	sema6b	Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Bb; Belongs to the semaphorin family. (866 aa)
	LOC101068750	Si:ch211-113g11.6; Belongs to the semaphorin family. (638 aa)
	LOC101062823	Attractin-like 1b. (1406 aa)
	LOC105417227	Sema domain-containing protein; Belongs to the semaphorin family. (613 aa)
	sema6a	Semaphorin 6A; Belongs to the semaphorin family. (1029 aa)
	LOC101067092	Attractin-like 1a. (1397 aa)
	sema4b	Sema domain-containing protein; Belongs to the semaphorin family. (837 aa)
	plxna4	Plexin A4. (1913 aa)
	sema3d	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D; Belongs to the semaphorin family. (808 aa)
	sema3b	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B; Belongs to the semaphorin family. (808 aa)
	met	Uncharacterized protein. (1425 aa)
	sema3g	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl; Belongs to the semaphorin family. (803 aa)
	sema3e	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family. (785 aa)
	sema3c	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C; Belongs to the semaphorin family. (862 aa)
	LOC101078657	Sema domain-containing protein. (2189 aa)
	sema6d	Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, like; Belongs to the semaphorin family. (1112 aa)
	plxna2	Plexin A2. (1901 aa)
	LOC101065592	Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D; Belongs to the semaphorin family. (1103 aa)
	LOC101061945	PSI domain-containing protein. (143 aa)
	sema5a	Sema domain-containing protein. (1080 aa)
	LOC101070355	Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E; Belongs to the semaphorin family. (1081 aa)
	ENSTRUP00000066677	Si:ch211-106h4.6. (424 aa)
	H2UK42_TAKRU	Sema domain-containing protein. (1981 aa)
	atrn	Attractin. (1382 aa)
	LOC101062443	Plexin A1. (1896 aa)
	LOC101070481	Plexin domain containing 1. (480 aa)
	LOC101066092	Uncharacterized protein; Belongs to the semaphorin family. (883 aa)
	LOC101076448	Sema domain-containing protein; Belongs to the semaphorin family. (918 aa)
	LOC101072191	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa; Belongs to the semaphorin family. (822 aa)
	sema3a	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family. (802 aa)
	SEMA4D	Semaphorin 4D; Belongs to the semaphorin family. (919 aa)
	LOC101062791	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fb; Belongs to the semaphorin family. (805 aa)
	LOC101062161	Plexin A1a. (1910 aa)

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2UK42_TAKRU	LOC101063126	ENSTRUP00000067092	ENSTRUP00000031475	Sema domain-containing protein.	Semaphorin 4G; Belongs to the semaphorin family.	0.464
H2UK42_TAKRU	LOC101064427	ENSTRUP00000067092	ENSTRUP00000056897	Sema domain-containing protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	0.508
H2UK42_TAKRU	LOC101065592	ENSTRUP00000067092	ENSTRUP00000063772	Sema domain-containing protein.	Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D; Belongs to the semaphorin family.	0.457
H2UK42_TAKRU	LOC101066092	ENSTRUP00000067092	ENSTRUP00000011855	Sema domain-containing protein.	Uncharacterized protein; Belongs to the semaphorin family.	0.464
H2UK42_TAKRU	LOC101068750	ENSTRUP00000067092	ENSTRUP00000081181	Sema domain-containing protein.	Si:ch211-113g11.6; Belongs to the semaphorin family.	0.539
H2UK42_TAKRU	LOC101070355	ENSTRUP00000067092	ENSTRUP00000064820	Sema domain-containing protein.	Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E; Belongs to the semaphorin family.	0.457
H2UK42_TAKRU	LOC101071388	ENSTRUP00000067092	ENSTRUP00000051635	Sema domain-containing protein.	Si:ch211-129c21.1; Belongs to the semaphorin family.	0.730
H2UK42_TAKRU	LOC101071528	ENSTRUP00000067092	ENSTRUP00000025241	Sema domain-containing protein.	Macrophage stimulating 1 receptor a.	0.549
H2UK42_TAKRU	LOC101076448	ENSTRUP00000067092	ENSTRUP00000012328	Sema domain-containing protein.	Sema domain-containing protein; Belongs to the semaphorin family.	0.457
H2UK42_TAKRU	LOC101076911	ENSTRUP00000067092	ENSTRUP00000015902	Sema domain-containing protein.	Semaphorin 4e; Belongs to the semaphorin family.	0.730
H2UK42_TAKRU	LOC105417227	ENSTRUP00000067092	ENSTRUP00000083105	Sema domain-containing protein.	Sema domain-containing protein; Belongs to the semaphorin family.	0.549
H2UK42_TAKRU	SEMA4D	ENSTRUP00000067092	ENSTRUP00000069334	Sema domain-containing protein.	Semaphorin 4D; Belongs to the semaphorin family.	0.753
H2UK42_TAKRU	met	ENSTRUP00000067092	ENSTRUP00000078415	Sema domain-containing protein.	Uncharacterized protein.	0.557
H2UK42_TAKRU	mst1r	ENSTRUP00000067092	ENSTRUP00000035729	Sema domain-containing protein.	Macrophage stimulating 1 receptor b.	0.549
H2UK42_TAKRU	sema3a	ENSTRUP00000067092	ENSTRUP00000070075	Sema domain-containing protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family.	0.508
H2UK42_TAKRU	sema3b	ENSTRUP00000067092	ENSTRUP00000078387	Sema domain-containing protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B; Belongs to the semaphorin family.	0.508
H2UK42_TAKRU	sema3e	ENSTRUP00000067092	ENSTRUP00000079630	Sema domain-containing protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family.	0.581
H2UK42_TAKRU	sema3g	ENSTRUP00000067092	ENSTRUP00000079090	Sema domain-containing protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl; Belongs to the semaphorin family.	0.549
H2UK42_TAKRU	sema4b	ENSTRUP00000067092	ENSTRUP00000072325	Sema domain-containing protein.	Sema domain-containing protein; Belongs to the semaphorin family.	0.589
H2UK42_TAKRU	sema5a	ENSTRUP00000067092	ENSTRUP00000064743	Sema domain-containing protein.	Sema domain-containing protein.	0.688